One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DrosophilaTFs/DrosophilaTFs_2015-11-06.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4_vs_db_DrosophilaTFs
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m4_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv4_m4_shift0 (oligos_6nt_mkv4_m4) |
 |
|
|
; oligos_6nt_mkv4_m4; m=0 (reference); ncol1=11; shift=0; ncol=11; ammAACACCmc
; Alignment reference
a 603 434 886 1461 1470 34 1378 0 0 542 381
c 379 473 435 6 49 1453 126 1550 1575 416 540
g 284 341 132 31 32 32 22 11 3 328 294
t 322 340 135 90 37 69 62 27 10 302 373
|
| 4954_br-Z4_DrosophilaTF_1.1__shift0 (4954_br-Z4_DrosophilaTF_1.1_) |
 |
|
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; oligos_6nt_mkv4_m4 versus 4954_br-Z4_DrosophilaTF_1.1_; m=1/1; ncol2=7; w=0; offset=0; strand=D; shift=0; score=0.517034; rkAAAsA----
; cor=; Ncor=
a 50 0 1 1 1 0 1 0 0 0 0
c 0 0 0 0 0 50 0 0 0 0 0
g 50 50 0 0 0 50 0 0 0 0 0
t 0 50 0 0 0 0 0 0 0 0 0
|