One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_6nt_mkv4_m8/peak-motifs_oligos_6nt_mkv4_m8.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_6nt_mkv4_m8/peak-motifs_oligos_6nt_mkv4_m8_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m8_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv4_m8_shift0 (oligos_6nt_mkv4_m8) |
 |
|
|
; oligos_6nt_mkv4_m8; m=0 (reference); ncol1=10; shift=0; ncol=10; mrCAAAACam
; Alignment reference
a 588 575 0 1505 1527 1517 1531 0 700 535
c 401 285 1520 0 0 0 0 1533 288 428
g 275 408 0 3 0 1 0 0 317 327
t 269 265 13 25 6 15 2 0 228 243
|
| pan_shift0 (pan) |
 |
|
|
; oligos_6nt_mkv4_m8 versus pan; m=1/1; ncol2=6; w=0; offset=0; strand=D; shift=0; score=0.527626; WtCAAA----
; cor=; Ncor=
a 18.72 5.2 3.12 20.8 23.92 23.92 0 0 0 0
c 0 4.16 20.8 0 1.04 0 0 0 0 0
g 0 0 1.04 0 0 0 0 0 0 0
t 7.28 16.64 1.04 5.2 1.04 2.08 0 0 0 0
|