compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey_2016.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_FlyFactorSurvey Program version 1.118 Quick mode Input files file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2.tf file2 $RSAT/public_html/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey_2016.tf Output files alignments_1ton_html $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_FlyFactorSurvey_alignments_1ton.html alignments_1ton $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_FlyFactorSurvey_alignments_1ton.tab match_table_txt $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_FlyFactorSurvey.tab html_index $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_FlyFactorSurvey_index.html prefix $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_FlyFactorSurvey match_table_html $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_FlyFactorSurvey.html Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2.tf file1 1 11 2338 file2 652 matrices $RSAT/public_html/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey_2016.tf file2 1 21 20 file2 2 26 461 file2 3 8 37 file2 4 8 7 file2 5 7 18 file2 6 8 662 file2 7 9 21 file2 8 8 2704 file2 9 8 19 file2 10 8 19 file2 11 7 23 ... 642 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_7nt_mkv5_m2 | CG9895_SOLEXA_5_FBgn0034810 | oligos_7nt_mkv5_m2 | CG9895_SOLEXA_5_FBgn0034810 | 0.793 | 0.793 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | R | 0 |
| oligos_7nt_mkv5_m2 | CG12029_SANGER_10_FBgn0035454 | oligos_7nt_mkv5_m2 | CG12029_SANGER_10_FBgn0035454 | 0.848 | 0.707 | 11 | 11 | 10 | 12 | 0.8333 | 0.9091 | 0.9091 | R | 1 |
| oligos_7nt_mkv5_m2 | CG12029_SOLEXA_5_FBgn0035454 | oligos_7nt_mkv5_m2 | CG12029_SOLEXA_5_FBgn0035454 | 0.867 | 0.636 | 11 | 15 | 11 | 15 | 0.7333 | 1.0000 | 0.7333 | R | -2 |
| oligos_7nt_mkv5_m2 | CG9895_SANGER_10_FBgn0034810 | oligos_7nt_mkv5_m2 | CG9895_SANGER_10_FBgn0034810 | 0.816 | 0.628 | 11 | 12 | 10 | 13 | 0.7692 | 0.9091 | 0.8333 | R | 1 |
| oligos_7nt_mkv5_m2 | CG3065_F1-3_SANGER_2.5_FBgn0034946 | oligos_7nt_mkv5_m2 | CG3065_F1-3_SANGER_2.5_FBgn0034946 | 0.731 | 0.609 | 11 | 11 | 10 | 12 | 0.8333 | 0.9091 | 0.9091 | R | 1 |
| oligos_7nt_mkv5_m2 | CG3065_F1-5_SOLEXA_2.5_FBgn0034946 | oligos_7nt_mkv5_m2 | CG3065_F1-5_SOLEXA_2.5_FBgn0034946 | 0.742 | 0.583 | 11 | 14 | 11 | 14 | 0.7857 | 1.0000 | 0.7857 | R | -1 |
| oligos_7nt_mkv5_m2 | luna_SOLEXA_5_FBgn0040765 | oligos_7nt_mkv5_m2 | luna_SOLEXA_5_FBgn0040765 | 0.738 | 0.580 | 11 | 14 | 11 | 14 | 0.7857 | 1.0000 | 0.7857 | R | 0 |
| oligos_7nt_mkv5_m2 | CG3065_F1-3_SOLEXA_2.5_FBgn0034946 | oligos_7nt_mkv5_m2 | CG3065_F1-3_SOLEXA_2.5_FBgn0034946 | 0.725 | 0.532 | 11 | 15 | 11 | 15 | 0.7333 | 1.0000 | 0.7333 | R | -1 |
| oligos_7nt_mkv5_m2 | klu_SOLEXA_5_FBgn0013469 | oligos_7nt_mkv5_m2 | klu_SOLEXA_5_FBgn0013469 | 0.714 | 0.523 | 11 | 15 | 11 | 15 | 0.7333 | 1.0000 | 0.7333 | R | 0 |
| oligos_7nt_mkv5_m2 | Opa_SANGER_5_FBgn0003002 | oligos_7nt_mkv5_m2 | Opa_SANGER_5_FBgn0003002 | 0.702 | 0.501 | 11 | 13 | 10 | 14 | 0.7143 | 0.9091 | 0.7692 | D | -3 |
| oligos_7nt_mkv5_m2 | lola-PL_SANGER_2.5_FBgn0005630 | oligos_7nt_mkv5_m2 | lola-PL_SANGER_2.5_FBgn0005630 | 0.894 | 0.482 | 11 | 9 | 7 | 13 | 0.5385 | 0.6364 | 0.7778 | R | -2 |
| oligos_7nt_mkv5_m2 | CG31782-F9-11_SOLEXA_FBgn0051782 | oligos_7nt_mkv5_m2 | CG31782-F9-11_SOLEXA_FBgn0051782 | 0.812 | 0.464 | 11 | 11 | 8 | 14 | 0.5714 | 0.7273 | 0.7273 | R | 3 |
| oligos_7nt_mkv5_m2 | ac_da_SANGER_5_FBgn0000022 | oligos_7nt_mkv5_m2 | ac_da_SANGER_5_FBgn0000022 | 0.749 | 0.437 | 11 | 8 | 7 | 12 | 0.5833 | 0.6364 | 0.8750 | D | 4 |
| oligos_7nt_mkv5_m2 | ac_da_SANGER_5_FBgn0000413 | oligos_7nt_mkv5_m2 | ac_da_SANGER_5_FBgn0000413 | 0.749 | 0.437 | 11 | 8 | 7 | 12 | 0.5833 | 0.6364 | 0.8750 | D | 4 |
| oligos_7nt_mkv5_m2 | sc_da_SANGER_10_FBgn0000413 | oligos_7nt_mkv5_m2 | sc_da_SANGER_10_FBgn0000413 | 0.735 | 0.429 | 11 | 8 | 7 | 12 | 0.5833 | 0.6364 | 0.8750 | D | 4 |
| oligos_7nt_mkv5_m2 | sc_da_SANGER_10_FBgn0004170 | oligos_7nt_mkv5_m2 | sc_da_SANGER_10_FBgn0004170 | 0.735 | 0.429 | 11 | 8 | 7 | 12 | 0.5833 | 0.6364 | 0.8750 | D | 4 |
| oligos_7nt_mkv5_m2 | HLH54F_da_SANGER_5_FBgn0022740 | oligos_7nt_mkv5_m2 | HLH54F_da_SANGER_5_FBgn0022740 | 0.716 | 0.409 | 11 | 11 | 8 | 14 | 0.5714 | 0.7273 | 0.7273 | D | 3 |
| oligos_7nt_mkv5_m2 | HLH54F_da_SANGER_5_FBgn0000413 | oligos_7nt_mkv5_m2 | HLH54F_da_SANGER_5_FBgn0000413 | 0.716 | 0.409 | 11 | 11 | 8 | 14 | 0.5714 | 0.7273 | 0.7273 | D | 3 |
Host name rsat Job started 2025-11-26.210721 Job done 2025-11-26.210724 Seconds 0.46 user 0.46 system 0.14 cuser 2.44 ; csystem 0.43