One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_7nt_mkv5_m7/peak-motifs_oligos_7nt_mkv5_m7.tf -format2 tf -file2 $RSAT/public_html/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey_2016.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_7nt_mkv5_m7/peak-motifs_oligos_7nt_mkv5_m7_vs_db_FlyFactorSurvey
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m7_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv5_m7_shift0 (oligos_7nt_mkv5_m7) |
 |
|
|
; oligos_7nt_mkv5_m7; m=0 (reference); ncol1=14; shift=0; ncol=14; ctCTCTyTCTCTCt
; Alignment reference
a 503 585 161 215 120 150 166 109 121 141 154 241 435 595
c 4268 736 5741 282 5809 301 4049 266 5870 243 5779 444 4387 960
g 471 820 143 252 136 244 156 293 76 286 147 332 524 719
t 1206 4307 403 5699 383 5753 2077 5780 381 5778 368 5431 1102 4174
|
| Trl_FlyReg_FBgn0013263_shift3 (Trl_FlyReg_FBgn0013263) |
 |
|
|
; oligos_7nt_mkv5_m7 versus Trl_FlyReg_FBgn0013263; m=1/2; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.582354; ---yykCTCTCty-
; cor=; Ncor=
a 0 0 0 4 6 12 0 3 1 13 5 7 9 0
c 0 0 0 22 23 6 64 0 70 0 54 13 33 0
g 0 0 0 9 11 30 3 14 0 2 7 11 10 0
t 0 0 0 36 31 23 4 54 0 56 5 40 19 0
|
| ken_SANGER_10_FBgn0011236_rc_shift3 (ken_SANGER_10_FBgn0011236_rc) |
 |
|
|
; oligos_7nt_mkv5_m7 versus ken_SANGER_10_FBgn0011236_rc; m=2/2; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.450205; ---ACTTTCwCy--
; cor=; Ncor=
a 0 0 0 17 0 0 0 1 0 8 0 0 0 0
c 0 0 0 3 24 0 0 0 24 1 22 14 0 0
g 0 0 0 4 0 0 0 0 0 2 0 1 0 0
t 0 0 0 0 0 24 24 23 0 13 2 9 0 0
|