RSAT - peak-motifs result

Analysis: MSMEG0225_Sequence (18/12/2025 10:43)

peak-motifs  -v 1 -title MSMEG0225_Sequence -i $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.104242_2025-12-18.104242_WjIaBg/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.104242_2025-12-18.104242_WjIaBg

motif discovery
oligos_6nt_mkv1	oligos_6nt_mkv1_m1 assembly: cgatga (sig=0.84; e-value=0.14) RC: tcatcg oligos_6nt_mkv1_m2 assembly: caccga (sig=0.73; e-value=0.19) RC: tcggtg oligos_6nt_mkv1_m3 assembly: atgagc (sig=0.39; e-value=0.41) RC: gctcat oligos_6nt_mkv1_m4 : (sig=; e-value=1) RC: oligos_6nt_mkv1_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv1	oligos_7nt_mkv1_m1 assembly: gatctacg (sig=0.52; e-value=0.3) RC: cgtagatc oligos_7nt_mkv1_m2 assembly: gatgagc (sig=0.29; e-value=0.51) RC: gctcatc oligos_7nt_mkv1_m3 assembly: aacagct (sig=0.23; e-value=0.59) RC: agctgtt oligos_7nt_mkv1_m4 assembly: acaccga (sig=0.22; e-value=0.6) RC: tcggtgt oligos_7nt_mkv1_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv1_m1	k-mer sig=0.84; evalue=0.14 gtCGATGAdc GHTCATCGAC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (100.00%) Max nb of predicted sites per peak: 4  (MSMEG_0225) Mean nb of predicted sites per peak: 4.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv1_m2	k-mer sig=0.73; evalue=0.19 aACACCGAcc GGTCGGTGTT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (100.00%) Max nb of predicted sites per peak: 3  (MSMEG_0225) Mean nb of predicted sites per peak: 3.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv1_m3	k-mer sig=0.39; evalue=0.41 sgATGAGCwy RWGCTCATCS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (100.00%) Max nb of predicted sites per peak: 4  (MSMEG_0225) Mean nb of predicted sites per peak: 4.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_7nt_mkv1_m1	k-mer sig=0.52; evalue=0.3 GWGATCTACGrs SYCGTAGATCWC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (100.00%) Max nb of predicted sites per peak: 2  (MSMEG_0225) Mean nb of predicted sites per peak: 2.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_7nt_mkv1_m2	k-mer sig=0.29; evalue=0.51 ysgATGAGcwy RWGCTCATCSR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (100.00%) Max nb of predicted sites per peak: 5  (MSMEG_0225) Mean nb of predicted sites per peak: 5.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv1_m3	k-mer sig=0.23; evalue=0.59 wsAACAGCTTs SAAGCTGTTSW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (100.00%) Max nb of predicted sites per peak: 3  (MSMEG_0225) Mean nb of predicted sites per peak: 3.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv1_m4	k-mer sig=0.22; evalue=0.6 vdACACCrAys SRTYGGTGTHB	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (100.00%) Max nb of predicted sites per peak: 5  (MSMEG_0225) Mean nb of predicted sites per peak: 5.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title MSMEG0225_Sequence -i $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.104242_2025-12-18.104242_WjIaBg/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.104242_2025-12-18.104242_WjIaBg

Warning: Not a single pattern was found in file tmp/www-data/2025/12/18/peak-motifs.2025-12-18.104242_2025-12-18.104242_WjIaBg/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/12/18/peak-motifs.2025-12-18.104242_2025-12-18.104242_WjIaBg/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab