RSAT - peak-motifs result

Analysis: WT_CPT (18/12/2025 16:49)

peak-motifs  -v 1 -title WT_CPT -i $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.161917_2025-12-18.161917_eVRxW9/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions,local_words -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.161917_2025-12-18.161917_eVRxW9

motif discovery
oligos_6nt_mkv4	oligos_6nt_mkv4_m1 assembly: gatgactcat (sig=350.00; e-value=0) RC: atgagtcatc oligos_6nt_mkv4_m2 assembly: agactg (sig=181.92; e-value=1.2e-182) RC: cagtct oligos_6nt_mkv4_m3 assembly: gactaat (sig=152.91; e-value=1.2e-153) RC: attagtc oligos_6nt_mkv4_m4 assembly: cactcca (sig=150.09; e-value=8.1e-151) RC: tggagtg oligos_6nt_mkv4_m5 assembly: tgattcat (sig=149.33; e-value=4.7e-150) RC: atgaatca	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_6nt	Not a single significant pattern	[local_words_6nt]
positions_6nt	positions_6nt_m1 assembly: ctatgactcag (sig=300; e-value=1e-300) RC: ctgagtcatag positions_6nt_m2 assembly: tggtgatgatgtcatgc (sig=300; e-value=1e-300) RC: gcatgacatcatcacca positions_6nt_m3 assembly: ggatgagtcagca (sig=300; e-value=1e-300) RC: tgctgactcatcc positions_6nt_m4 assembly: agatgactaat (sig=300; e-value=1e-300) RC: attagtcatct positions_6nt_m5 assembly: ctatgactcacca (sig=300; e-value=1e-300) RC: tggtgagtcatag	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
oligos_7nt_mkv5	oligos_7nt_mkv5_m1 assembly: tgactcat (sig=196.46; e-value=3.5e-197) RC: atgagtca oligos_7nt_mkv5_m2 assembly: tgaatcat (sig=145.14; e-value=7.2e-146) RC: atgattca oligos_7nt_mkv5_m3 assembly: agactct (sig=142.10; e-value=7.9e-143) RC: agagtct oligos_7nt_mkv5_m4 assembly: agagtcc (sig=140.14; e-value=7.2e-141) RC: ggactct oligos_7nt_mkv5_m5 assembly: agactcc (sig=135.74; e-value=1.8e-136) RC: ggagtct	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_7nt	Not a single significant pattern	[local_words_7nt]
positions_7nt	positions_7nt_m1 assembly: ggtgatgatgagtcactg (sig=300; e-value=1e-300) RC: cagtgactcatcatcacc positions_7nt_m2 assembly: atgaatcat (sig=300; e-value=1e-300) RC: atgattcat positions_7nt_m3 assembly: tgctgactcatg (sig=300; e-value=1e-300) RC: catgagtcagca positions_7nt_m4 assembly: aggatgactcacc (sig=300; e-value=1e-300) RC: ggtgagtcatcct positions_7nt_m5 assembly: aatgagtcatag (sig=300; e-value=1e-300) RC: ctatgactcatt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   oligos_6nt_mkv4_m1	k-mer sig=350.00; evalue=0 rtgrTGACTCAthc GDATGAGTCAYCAY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rtgrTGACTCAthc BACH2 MA1101.3 R 11 0.7857 0.918 0.722 NA NA Mafg MA0659.4 D 12 0.8571 0.815 0.698 NA NA FOSL2 MA0478.2 D 10 0.7143 0.974 0.696 NA NA Total matches= 32 (29 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 26985 (43.56%) Max nb of predicted sites per peak: 62  (chromosome_GRCh38_16_1_90338345_1:89994787-89996140()) Mean nb of predicted sites per peak: 1.58	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv4_m2	k-mer sig=181.92; evalue=1.2e-182 csAGACTGmr YKCAGTCTSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor csAGACTGmr FEZF2 MA2341.1 R 8 0.8000 0.723 0.578 NA NA Smad4 MA1153.2 R 7 0.7000 0.725 0.508 NA NA SMAD2 MA1964.2 D 6 0.6000 0.839 0.504 NA NA Total matches= 3		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 3277 (5.29%) Max nb of predicted sites per peak: 5  (chromosome_GRCh38_4_1_190214555_1:2430022-2430602()) Mean nb of predicted sites per peak: 1.04	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv4_m3	k-mer sig=152.91; evalue=1.2e-153 rtGACTAATaa TTATTAGTCAY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rtGACTAATaa NFE2 MA0841.2 D 10 0.9091 0.790 0.718 NA NA FOSL1::JUNB MA1137.2 D 9 0.8182 0.874 0.715 NA NA FOSB::JUNB MA1135.2 D 9 0.8182 0.850 0.696 NA NA Total matches= 123 (120 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 11346 (18.31%) Max nb of predicted sites per peak: 33  (chromosome_GRCh38_8_1_145138636_1:6648837-6649592()) Mean nb of predicted sites per peak: 1.11	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv4_m4	k-mer sig=150.09; evalue=8.1e-151 ytCACTCCabc GVTGGAGTGAR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ytCACTCCabc SREBF2 MA0596.1 R 10 0.9091 0.716 0.651 NA NA SREBF1 MA0595.1 D 10 0.9091 0.706 0.642 NA NA TEAD1 MA0090.4 D 9 0.8182 0.718 0.587 NA NA Total matches= 14 (11 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 3116 (5.03%) Max nb of predicted sites per peak: 14  (chromosome_GRCh38_Y_1_57227415_1:56834399-56834618()) Mean nb of predicted sites per peak: 1.07	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv4_m5	k-mer sig=149.33; evalue=4.7e-150 rrTGAbTCATyh DRATGAVTCAYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rrTGAbTCATyh BACH2 MA1101.3 R 11 0.9167 0.909 0.833 NA NA FOSL2 MA0478.2 R 10 0.8333 0.935 0.779 NA NA NFE2 MA0841.2 R 10 0.8333 0.926 0.772 NA NA Total matches= 37 (34 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 21287 (34.36%) Max nb of predicted sites per peak: 33  (chromosome_GRCh38_16_1_90338345_1:89994787-89996140()) Mean nb of predicted sites per peak: 1.39	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   positions_6nt_m1	k-mer sig=300; evalue=1e-300 awctATGACTCAgmm KKCTGAGTCATAGWT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor awctATGACTCAgmm Bach1::Mafk MA0591.2 D 12 0.8000 0.842 0.674 NA NA MAFG::NFE2L1 MA0089.3 D 11 0.7333 0.905 0.663 NA NA Mafg MA0659.4 D 12 0.8000 0.827 0.661 NA NA Total matches= 32 (29 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20218 (32.63%) Max nb of predicted sites per peak: 34  (chromosome_GRCh38_16_1_90338345_1:89994787-89996140()) Mean nb of predicted sites per peak: 1.24	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   positions_6nt_m2	k-mer sig=300; evalue=1e-300 krtggTGATGATGTCATgctk MAGCATGACATCATCACCAYM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor krtggTGATGATGTCATgctk BACH2 MA1470.2 D 19 0.9048 0.702 0.635 NA NA FOS MA1951.2 R 13 0.6190 0.855 0.529 NA NA JUND MA0492.2 D 11 0.5238 0.951 0.498 NA NA Total matches= 18 (15 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5095 (8.22%) Max nb of predicted sites per peak: 45  (chromosome_GRCh38_12_1_133275309_1:130764619-130765591()) Mean nb of predicted sites per peak: 1.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   positions_6nt_m3	k-mer sig=300; evalue=1e-300 rrGgATGAGTCAgcatr YATGCTGACTCATCCYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rrGgATGAGTCAgcatr Mafg MA0659.4 D 12 0.7059 0.859 0.606 NA NA Bach1::Mafk MA0591.2 D 12 0.7059 0.848 0.599 NA NA BACH2 MA1101.3 R 11 0.6471 0.866 0.560 NA NA Total matches= 36 (33 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19040 (30.73%) Max nb of predicted sites per peak: 31  (chromosome_GRCh38_16_1_90338345_1:89994787-89996140()) Mean nb of predicted sites per peak: 1.21	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   positions_6nt_m4	k-mer sig=300; evalue=1e-300 aaAGATGACTmAtwh DWATKAGTCATCTTT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor aaAGATGACTmAtwh BACH2 MA1101.3 R 11 0.7333 0.838 0.614 NA NA NFE2 MA0841.2 D 10 0.6667 0.898 0.599 NA NA Mafg MA0659.4 D 12 0.8000 0.744 0.595 NA NA Total matches= 32 (29 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 14063 (22.70%) Max nb of predicted sites per peak: 32  (chromosome_GRCh38_8_1_145138636_1:6648837-6649592()) Mean nb of predicted sites per peak: 1.19	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   positions_6nt_m5	k-mer sig=300; evalue=1e-300 arctATGACTCAccayw WRTGGTGAGTCATAGYT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor arctATGACTCAccayw Bach1::Mafk MA0591.2 D 12 0.7059 0.822 0.580 NA NA MAFG::NFE2L1 MA0089.3 D 11 0.6471 0.874 0.566 NA NA Mafg MA0659.4 D 12 0.7059 0.795 0.561 NA NA Total matches= 32 (29 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 21378 (34.51%) Max nb of predicted sites per peak: 29  (chromosome_GRCh38_16_1_90338345_1:89994787-89996140()) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   oligos_7nt_mkv5_m1	k-mer sig=196.46; evalue=3.5e-197 rrTGACTCAtyc GRATGAGTCAYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rrTGACTCAtyc BACH2 MA1101.3 D 11 0.9167 0.920 0.844 NA NA FOSL2 MA0478.2 D 10 0.8333 0.964 0.803 NA NA Mafg MA0659.4 D 12 1.0000 0.795 0.795 NA NA Total matches= 34 (31 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 27267 (44.01%) Max nb of predicted sites per peak: 60  (chromosome_GRCh38_16_1_90338345_1:89994787-89996140()) Mean nb of predicted sites per peak: 1.64	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   oligos_7nt_mkv5_m2	k-mer sig=145.14; evalue=7.2e-146 rrTGAvTCATbh DVATGABTCAYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rrTGAvTCATbh BACH2 MA1101.3 D 11 0.9167 0.913 0.837 NA NA FOSL2 MA0478.2 R 10 0.8333 0.941 0.784 NA NA NFE2 MA0841.2 R 10 0.8333 0.929 0.774 NA NA Total matches= 38 (35 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 21518 (34.73%) Max nb of predicted sites per peak: 33  (chromosome_GRCh38_16_1_90338345_1:89994787-89996140()) Mean nb of predicted sites per peak: 1.42	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   oligos_7nt_mkv5_m3	k-mer sig=142.10; evalue=7.9e-143 whAGACTCTrw WYAGAGTCTDW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor whAGACTCTrw Smad4 MA1153.2 R 7 0.6364 0.716 0.456 NA NA SMAD2 MA1964.2 D 6 0.5455 0.823 0.449 NA NA Total matches= 2		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1483 (2.39%) Max nb of predicted sites per peak: 23  (chromosome_GRCh38_8_1_145138636_1:144767431-144768484()) Mean nb of predicted sites per peak: 1.03	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 14   oligos_7nt_mkv5_m4	k-mer sig=140.14; evalue=7.2e-141 yyAGAGTCCkg CMGGACTCTRR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yyAGAGTCCkg HNF4G MA0484.3 D 9 0.8182 0.751 0.615 NA NA HNF4A MA0114.5 D 9 0.8182 0.748 0.612 NA NA Prdm14 MA1998.2 R 8 0.7273 0.765 0.556 NA NA Total matches= 3		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1239 (2.00%) Max nb of predicted sites per peak: 13  (chromosome_GRCh38_9_1_138394717_1:132269707-132270449()) Mean nb of predicted sites per peak: 1.03	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 15   oligos_7nt_mkv5_m5	k-mer sig=135.74; evalue=1.8e-136 ycAGACTCCrs SYGGAGTCTGR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ycAGACTCCrs SMAD2 MA1964.2 D 6 0.5455 0.844 0.461 NA NA Smad4 MA1153.2 R 7 0.6364 0.719 0.458 NA NA Total matches= 2		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1542 (2.49%) Max nb of predicted sites per peak: 7  (chromosome_GRCh38_4_1_190214555_1:2430022-2430602()) Mean nb of predicted sites per peak: 1.02	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 16   positions_7nt_m1	k-mer sig=300; evalue=1e-300 kdkgTgATgATGAgTCACTghr YDCAGTGACTCATCATCACMHM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor kdkgTgATgATGAgTCACTghr Bach1::Mafk MA0591.2 R 12 0.5455 0.788 0.430 NA NA BACH2 MA1101.3 R 11 0.5000 0.844 0.422 NA NA MAFG::NFE2L1 MA0089.3 R 11 0.5000 0.836 0.418 NA NA Total matches= 8 (5 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 9806 (15.83%) Max nb of predicted sites per peak: 15  (chromosome_GRCh38_9_1_138394717_1:132269707-132270449()) Mean nb of predicted sites per peak: 1.08	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 17   positions_7nt_m2	k-mer sig=300; evalue=1e-300 rraTGAvTCAthh DDATGABTCATYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rraTGAvTCAthh BACH2 MA1101.3 D 11 0.8462 0.921 0.779 NA NA FOSL2 MA0478.2 D 10 0.7692 0.946 0.728 NA NA NFE2 MA0841.2 R 10 0.7692 0.938 0.722 NA NA Total matches= 37 (34 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 21464 (34.64%) Max nb of predicted sites per peak: 54  (chromosome_GRCh38_7_1_159345973_1:157932445-157933978()) Mean nb of predicted sites per peak: 1.82	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 18   positions_7nt_m3	k-mer sig=300; evalue=1e-300 mrtgcTGACTCATgcy RGCATGAGTCAGCAYK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor mrtgcTGACTCATgcy Bach1::Mafk MA0591.2 R 12 0.7500 0.849 0.637 NA NA BACH2 MA1101.3 R 11 0.6875 0.903 0.621 NA NA Mafg MA0659.4 R 12 0.7500 0.807 0.605 NA NA Total matches= 36 (33 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19836 (32.02%) Max nb of predicted sites per peak: 35  (chromosome_GRCh38_16_1_90338345_1:89994787-89996140()) Mean nb of predicted sites per peak: 1.23	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 19   positions_7nt_m4	k-mer sig=300; evalue=1e-300 carggATGACTCAcchy RDGGTGAGTCATCCYTG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor carggATGACTCAcchy Mafg MA0659.4 D 12 0.7059 0.850 0.600 NA NA Bach1::Mafk MA0591.2 D 12 0.7059 0.842 0.594 NA NA MAFG::NFE2L1 MA0089.3 D 11 0.6471 0.864 0.559 NA NA Total matches= 32 (29 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 18880 (30.47%) Max nb of predicted sites per peak: 56  (chromosome_GRCh38_7_1_159345973_1:157932445-157933978()) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 20   positions_7nt_m5	k-mer sig=300; evalue=1e-300 rraATGAGTCATarwt AWYTATGACTCATTYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rraATGAGTCATarwt BACH2 MA1101.3 R 11 0.6875 0.893 0.614 NA NA NFE2 MA0841.2 R 10 0.6250 0.959 0.599 NA NA FOSL2 MA0478.2 R 10 0.6250 0.922 0.576 NA NA Total matches= 32 (29 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19017 (30.69%) Max nb of predicted sites per peak: 26  (chromosome_GRCh38_9_1_138394717_1:132269707-132270449()) Mean nb of predicted sites per peak: 1.44	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title WT_CPT -i $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.161917_2025-12-18.161917_eVRxW9/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions,local_words -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.161917_2025-12-18.161917_eVRxW9

Warning: Not a single pattern was found in file tmp/www-data/2025/12/18/peak-motifs.2025-12-18.161917_2025-12-18.161917_eVRxW9/results/local_words_6nt/peak-motifs_local_words-2str-noov_6nt_windgroup50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/12/18/peak-motifs.2025-12-18.161917_2025-12-18.161917_eVRxW9/results/local_words_7nt/peak-motifs_local_words-2str-noov_7nt_windgroup50.tab