position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171534_2025-12-18.171534_bJonYL/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title NG_0.01 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171534_2025-12-18.171534_bJonYL/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171534_2025-12-18.171534_bJonYL/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171534_2025-12-18.171534_bJonYL/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 513 Sum of sequence lengths 138558 Min sequence length 0 Max sequence length 1000 Average sequence length 270 Possible positions 138558 Oligonucleotide statistics: Total occurrences 80823 Position interval parameters: Position interval 20 Number of windows 50 Total positions 138558 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 7 130 2 -24 [-479,-460] -469.5 7 140 3 -23 [-459,-440] -449.5 9 150 4 -22 [-439,-420] -429.5 11 204 5 -21 [-419,-400] -409.5 11 220 6 -20 [-399,-380] -389.5 11 220 7 -19 [-379,-360] -369.5 12 240 8 -18 [-359,-340] -349.5 13 242 9 -17 [-339,-320] -329.5 18 317 10 -16 [-319,-300] -309.5 22 406 11 -15 [-299,-280] -289.5 25 464 12 -14 [-279,-260] -269.5 30 545 13 -13 [-259,-240] -249.5 38 655 14 -12 [-239,-220] -229.5 49 868 15 -11 [-219,-200] -209.5 60 1089 16 -10 [-199,-180] -189.5 84 1419 17 -9 [-179,-160] -169.5 110 1956 18 -8 [-159,-140] -149.5 136 2423 19 -7 [-139,-120] -129.5 195 3334 20 -6 [-119,-100] -109.5 308 5103 21 -5 [-99,-80] -89.5 513 8364 22 -4 [-79,-60] -69.5 513 10260 23 -3 [-59,-40] -49.5 513 10260 24 -2 [-39,-20] -29.5 513 10260 25 -1 [-19,0] -9.5 513 10260 26 0 [1,20] 10.5 513 10260 27 1 [21,40] 30.5 513 10260 28 2 [41,60] 50.5 513 10260 29 3 [61,80] 70.5 513 10260 30 4 [81,100] 90.5 513 8177 31 5 [101,120] 110.5 300 4978 32 6 [121,140] 130.5 192 3284 33 7 [141,160] 150.5 134 2392 34 8 [161,180] 170.5 110 1938 35 9 [181,200] 190.5 81 1387 36 10 [201,220] 210.5 60 1077 37 11 [221,240] 230.5 48 856 38 12 [241,260] 250.5 38 650 39 13 [261,280] 270.5 29 539 40 14 [281,300] 290.5 25 462 41 15 [301,320] 310.5 21 400 42 16 [321,340] 330.5 18 313 43 17 [341,360] 350.5 13 241 44 18 [361,380] 370.5 12 238 45 19 [381,400] 390.5 11 220 46 20 [401,420] 410.5 11 220 47 21 [421,440] 430.5 11 201 48 22 [441,460] 450.5 9 148 49 23 [461,480] 470.5 7 140 50 24 [481,500] 490.5 7 128 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t | t | 28111 | 2424.4 | 49 | 0.0e+00 | 0 | 300 | 1 | 4 | 11 | 6 | 12 | 19 | 15 | 12 | 12 | 13 | 17 | 35 | 61 | 77 | 56 | 81 | 143 | 225 | 296 | 488 | 1052 | 1952 | 2583 | 2434 | 2465 | 2433 | 2421 | 2407 | 2422 | 2444 | 1742 | 852 | 435 | 265 | 202 | 121 | 73 | 58 | 40 | 21 | 4 | 12 | 12 | 13 | 15 | 8 | 11 | 5 | 7 | 9 | 10 |
| a | a | 28717 | 2313.5 | 49 | 0.0e+00 | 0 | 300 | 2 | 7 | 1 | 8 | 18 | 5 | 10 | 29 | 11 | 19 | 17 | 33 | 62 | 64 | 76 | 99 | 153 | 259 | 345 | 580 | 1052 | 2082 | 2596 | 2523 | 2411 | 2454 | 2494 | 2421 | 2375 | 2464 | 1818 | 885 | 442 | 292 | 206 | 99 | 76 | 67 | 31 | 25 | 6 | 6 | 11 | 7 | 10 | 8 | 8 | 14 | 11 | 18 | 9 |
| g | g | 12355 | 540.6 | 49 | 0.0e+00 | 0 | 300 | 3 | 5 | 6 | 8 | 12 | 10 | 10 | 12 | 4 | 17 | 17 | 25 | 26 | 35 | 34 | 63 | 98 | 145 | 169 | 297 | 490 | 865 | 1105 | 1006 | 997 | 970 | 891 | 1015 | 986 | 1032 | 822 | 414 | 223 | 142 | 108 | 82 | 54 | 30 | 18 | 13 | 7 | 8 | 6 | 6 | 11 | 10 | 12 | 16 | 9 | 9 | 5 |
| c | c | 11640 | 529.7 | 49 | 0.0e+00 | 0 | 300 | 4 | 2 | 2 | 4 | 8 | 7 | 10 | 10 | 5 | 11 | 19 | 26 | 43 | 45 | 45 | 47 | 90 | 105 | 163 | 250 | 438 | 817 | 938 | 989 | 968 | 967 | 919 | 928 | 968 | 935 | 764 | 402 | 213 | 143 | 104 | 66 | 41 | 38 | 14 | 13 | 5 | 4 | 14 | 14 | 4 | 14 | 11 | 5 | 4 | 4 | 4 |
Host name rsat Job started 2025-12-18.171537 Job done 2025-12-18.171538 Seconds 0.75 user 0.75 system 0.01 cuser 0 ; csystem 0