/var/www/html/rsat/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171534_2025-12-18.171534_bJonYL/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171534_2025-12-18.171534_bJonYL/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title NG_0.01 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171534_2025-12-18.171534_bJonYL/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171534_2025-12-18.171534_bJonYL/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171534_2025-12-18.171534_bJonYL/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	513
	Sum of sequence lengths      	138558
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	270
	Possible positions           	138045
 Oligonucleotide statistics:
	Total occurrences    	80259
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	138045
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	7	130
	2	-24	[-479,-460]	-469.5	7	140
	3	-23	[-459,-440]	-449.5	9	150
	4	-22	[-439,-420]	-429.5	11	204
	5	-21	[-419,-400]	-409.5	11	220
	6	-20	[-399,-380]	-389.5	11	220
	7	-19	[-379,-360]	-369.5	12	240
	8	-18	[-359,-340]	-349.5	13	242
	9	-17	[-339,-320]	-329.5	18	317
	10	-16	[-319,-300]	-309.5	22	406
	11	-15	[-299,-280]	-289.5	25	464
	12	-14	[-279,-260]	-269.5	30	545
	13	-13	[-259,-240]	-249.5	38	655
	14	-12	[-239,-220]	-229.5	49	868
	15	-11	[-219,-200]	-209.5	60	1089
	16	-10	[-199,-180]	-189.5	84	1419
	17	-9	[-179,-160]	-169.5	110	1956
	18	-8	[-159,-140]	-149.5	136	2423
	19	-7	[-139,-120]	-129.5	195	3334
	20	-6	[-119,-100]	-109.5	308	5103
	21	-5	[-99,-80]	-89.5	513	8364
	22	-4	[-79,-60]	-69.5	513	10260
	23	-3	[-59,-40]	-49.5	513	10260
	24	-2	[-39,-20]	-29.5	513	10260
	25	-1	[-19,0]	-9.5	513	10260
	26	0	[1,20]	10.5	513	10260
	27	1	[21,40]	30.5	513	10260
	28	2	[41,60]	50.5	513	10260
	29	3	[61,80]	70.5	513	10260
	30	4	[81,100]	90.5	513	7964
	31	5	[101,120]	110.5	295	4870
	32	6	[121,140]	130.5	189	3226
	33	7	[141,160]	150.5	134	2368
	34	8	[161,180]	170.5	110	1909
	35	9	[181,200]	190.5	79	1366
	36	10	[201,220]	210.5	59	1065
	37	11	[221,240]	230.5	48	846
	38	12	[241,260]	250.5	38	641
	39	13	[261,280]	270.5	29	535
	40	14	[281,300]	290.5	25	458
	41	15	[301,320]	310.5	21	397
	42	16	[321,340]	330.5	18	308
	43	17	[341,360]	350.5	12	240
	44	18	[361,380]	370.5	12	237
	45	19	[381,400]	390.5	11	220
	46	20	[401,420]	410.5	11	220
	47	21	[421,440]	430.5	11	199
	48	22	[441,460]	450.5	9	146
	49	23	[461,480]	470.5	7	140
	50	24	[481,500]	490.5	7	121

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
tt tt 10310 1254.9 49 0.0e+00 0 300 1 1 7 2 0 11 6 2 6 4 5 10 18 31 12 19 41 61 85 130 364 620 966 962 955 919 931 932 945 984 594 274 140 87 63 29 26 18 14 5 1 3 3 5 7 2 3 0 2 2 3
aa aa 10725 1151.0 49 0.0e+00 0 300 2 1 0 1 6 0 2 11 3 7 5 7 17 16 24 35 33 92 115 194 375 729 978 1013 905 961 1000 941 960 959 616 284 134 101 62 29 29 27 10 8 2 2 3 1 1 2 3 5 4 9 3
ta ta 8800 844.3 49 0.0e+00 0 300 3 2 1 1 9 2 0 5 3 1 1 10 16 13 22 30 48 88 116 186 338 730 791 736 737 769 769 733 734 752 536 274 130 81 56 25 15 8 10 6 1 3 1 2 1 1 1 0 2 2 2
at at 9806 706.4 49 0.0e+00 0 300 4 3 1 4 7 3 6 8 5 5 8 15 35 32 30 38 65 84 107 208 384 768 925 821 829 823 827 807 767 809 578 318 160 107 72 40 26 22 16 9 1 2 2 3 6 5 3 3 1 4 4
ct ct 4236 397.3 49 4.8e-56 7.6e-55 54.12 5 0 1 1 3 1 1 1 0 1 1 5 3 9 6 9 15 39 66 62 171 307 363 367 385 390 366 360 389 338 261 117 63 39 36 20 9 6 5 4 0 1 4 3 0 1 2 1 3 1 0
ag ag 4474 353.3 49 1.1e-47 1.8e-46 45.74 6 1 0 2 2 2 0 3 2 4 3 7 2 11 10 14 23 47 60 104 160 317 398 369 393 363 381 393 351 389 319 133 73 44 35 17 14 7 1 3 2 1 1 0 2 0 0 5 3 3 0
tg tg 4648 301.9 49 4.2e-38 6.7e-37 36.18 7 1 2 2 0 4 4 4 2 3 4 4 10 9 7 16 31 42 45 93 182 334 458 373 384 374 367 376 399 382 306 160 71 47 42 35 14 15 5 7 1 4 4 3 5 3 4 3 2 3 2
ca ca 4401 284.8 49 5.4e-35 8.7e-34 33.06 8 0 0 1 2 0 2 5 3 5 6 4 17 15 18 11 33 29 57 97 160 280 394 391 364 384 352 353 348 397 296 149 75 52 30 15 16 16 3 3 1 2 3 1 3 2 2 1 0 2 1
gt gt 3623 260.0 49 1.6e-30 2.5e-29 28.60 9 0 3 0 1 4 1 1 1 3 2 8 2 5 4 15 24 33 45 92 143 264 333 278 314 292 281 306 307 316 245 113 61 28 25 26 11 9 3 2 2 5 2 2 2 1 1 2 0 4 1
ac ac 3561 246.6 49 3.8e-28 6e-27 26.22 10 1 0 1 2 0 2 5 1 2 1 4 8 4 10 10 31 32 61 72 128 264 291 317 279 305 284 278 297 305 260 124 63 34 32 10 6 10 4 5 1 1 4 3 1 1 2 1 2 2 0
tc tc 4163 242.1 49 2.3e-27 3.7e-26 25.43 11 0 1 1 3 2 5 1 1 5 7 11 17 22 13 16 21 33 49 77 163 263 357 358 387 368 351 364 342 326 231 115 78 47 34 28 17 16 9 2 1 1 3 3 2 2 2 2 1 2 3
ga ga 4594 209.6 49 9.4e-22 1.5e-20 19.82 12 3 0 5 2 2 5 8 1 6 7 9 13 18 13 24 37 52 54 98 181 324 420 394 374 351 378 380 338 368 299 142 79 56 43 28 17 15 7 6 1 1 2 2 5 3 3 7 7 3 3
gg gg 2250 88.3 49 4.9e-04 0.0079 2.10 13 2 2 2 7 0 3 1 0 5 4 3 7 7 9 15 20 36 45 62 98 143 196 199 161 173 112 189 182 200 124 74 49 30 18 17 15 5 7 3 3 0 0 0 3 4 5 5 2 2 1
gc gc 1786 79.2 49 4.0e-03 0.064 1.19 14 0 1 1 2 3 1 2 2 3 4 5 4 5 8 9 15 19 24 44 65 131 154 129 147 153 118 137 158 146 128 66 28 22 15 10 9 1 1 1 1 2 2 2 1 2 3 2 0 0 0
cc cc 2031 78.6 49 4.7e-03 0.075 1.13 15 1 0 1 1 2 3 1 1 1 6 7 14 14 13 11 24 18 23 56 71 165 125 169 161 142 155 156 173 147 128 83 41 34 22 14 6 11 0 3 2 0 6 6 1 7 5 0 0 0 1
cg cg 851 54.4 49 2.8e-01 4.4 -0.65 16 1 1 1 2 4 3 3 0 4 6 10 8 7 7 15 17 18 15 33 35 63 54 61 54 46 43 55 57 51 44 34 25 15 11 11 9 4 3 1 1 1 1 4 0 4 2 3 1 1 2 
 Host name	rsat
 Job started	2025-12-18.171539
 Job done	2025-12-18.171540
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