/var/www/html/rsat/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171534_2025-12-18.171534_bJonYL/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171534_2025-12-18.171534_bJonYL/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171534_2025-12-18.171534_bJonYL/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171534_2025-12-18.171534_bJonYL/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171534_2025-12-18.171534_bJonYL/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171534_2025-12-18.171534_bJonYL/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171534_2025-12-18.171534_bJonYL/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171534_2025-12-18.171534_bJonYL/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171534_2025-12-18.171534_bJonYL/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171534_2025-12-18.171534_bJonYL/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171534_2025-12-18.171534_bJonYL/results/discovered_motifs/peak-motifs_motifs_disco_compa
 Matrices
	file1	14 matrices	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171534_2025-12-18.171534_bJonYL/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	21	1827
		file1	2	11	841
		file1	3	13	753
		file1	4	10	411
		file1	5	11	957
		file1	6	15	112
		file1	7	16	91
		file1	8	13	198
		file1	9	10	326
		file1	10	19	2425
		file1	11	18	2022
		...	4 more matrices
	file2	14 matrices	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171534_2025-12-18.171534_bJonYL/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		21		1827
		file2		2		11		841
		file2		3		13		753
		file2		4		10		411
		file2		5		11		957
		file2		6		15		112
		file2		7		16		91
		file2		8		13		198
		file2		9		10		326
		file2		10		19		2425
		file2		11		18		2022
		...	4 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 1.000 1.000 18 18 18 18 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 1.000 1.000 19 19 19 19 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m5 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 1.000 1.000 21 21 21 21 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_6nt_m3 positions_6nt_m3 positions_6nt_m3 positions_6nt_m3 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
positions_6nt_m4 positions_6nt_m4 positions_6nt_m4 positions_6nt_m4 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
positions_6nt_m1 positions_6nt_m1 positions_6nt_m1 positions_6nt_m1 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
positions_6nt_m2 positions_6nt_m2 positions_6nt_m2 positions_6nt_m2 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m2 0.991 0.939 19 18 18 19 0.9474 0.9474 1.0000 R 1
oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m1 0.991 0.939 18 19 18 19 0.9474 1.0000 0.9474 R 0
oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m2 0.991 0.849 21 18 18 21 0.8571 0.8571 1.0000 R 0
oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m1 0.991 0.849 18 21 18 21 0.8571 1.0000 0.8571 R -3
oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m3 oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m3 0.985 0.833 13 11 11 13 0.8462 0.8462 1.0000 R 2
oligos_7nt_mkv4_m3 oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m3 oligos_6nt_mkv3_m3 0.985 0.833 11 13 11 13 0.8462 1.0000 0.8462 R 0
oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m1 0.990 0.810 21 19 18 22 0.8182 0.8571 0.9474 D -1
oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m1 0.990 0.810 19 21 18 22 0.8182 0.9474 0.8571 D 1
positions_6nt_m2 positions_6nt_m1 positions_6nt_m2 positions_6nt_m1 0.849 0.796 16 15 15 16 0.9375 0.9375 1.0000 D 1
positions_6nt_m1 positions_6nt_m2 positions_6nt_m1 positions_6nt_m2 0.849 0.796 15 16 15 16 0.9375 1.0000 0.9375 D -1
positions_6nt_m1 positions_6nt_m3 positions_6nt_m1 positions_6nt_m3 0.870 0.754 15 13 13 15 0.8667 0.8667 1.0000 D 0
positions_6nt_m3 positions_6nt_m1 positions_6nt_m3 positions_6nt_m1 0.870 0.754 13 15 13 15 0.8667 1.0000 0.8667 D 0
positions_6nt_m2 positions_6nt_m3 positions_6nt_m2 positions_6nt_m3 0.851 0.691 16 13 13 16 0.8125 0.8125 1.0000 D 0
positions_6nt_m3 positions_6nt_m2 positions_6nt_m3 positions_6nt_m2 0.851 0.691 13 16 13 16 0.8125 1.0000 0.8125 D 0
oligos_6nt_mkv3_m4 positions_6nt_m1 oligos_6nt_mkv3_m4 positions_6nt_m1 0.910 0.606 10 15 10 15 0.6667 1.0000 0.6667 D -4
positions_6nt_m1 oligos_6nt_mkv3_m4 positions_6nt_m1 oligos_6nt_mkv3_m4 0.910 0.606 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_6nt_mkv3_m4 positions_6nt_m2 oligos_6nt_mkv3_m4 positions_6nt_m2 0.897 0.561 10 16 10 16 0.6250 1.0000 0.6250 D -5
positions_6nt_m2 oligos_6nt_mkv3_m4 positions_6nt_m2 oligos_6nt_mkv3_m4 0.897 0.561 16 10 10 16 0.6250 0.6250 1.0000 D 5
oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m1 0.896 0.538 13 19 12 20 0.6000 0.9231 0.6316 R -7
oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m5 0.896 0.538 19 13 12 20 0.6000 0.6316 0.9231 R -1
oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m2 0.727 0.519 13 11 10 14 0.7143 0.7692 0.9091 D 3
oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m3 0.727 0.519 11 13 10 14 0.7143 0.9091 0.7692 D -3
oligos_7nt_mkv4_m5 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m5 oligos_6nt_mkv3_m1 0.807 0.499 13 21 13 21 0.6190 1.0000 0.6190 R 0
oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m5 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m5 0.807 0.499 21 13 13 21 0.6190 0.6190 1.0000 R 8
oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m2 0.865 0.476 13 18 11 20 0.5500 0.8462 0.6111 D -7
oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m5 0.865 0.476 18 13 11 20 0.5500 0.6111 0.8462 D 7 
 Host name	rsat
 Job started	2025-12-18.171607
 Job done	2025-12-18.171616
 Seconds	0.77
	user	0.77
	system	0.36
	cuser	7.77
;	csystem	1.18