position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171557_2025-12-18.171557_4Sppd9/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title HG_0.01 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171557_2025-12-18.171557_4Sppd9/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171557_2025-12-18.171557_4Sppd9/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171557_2025-12-18.171557_4Sppd9/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 2495 Sum of sequence lengths 644090 Min sequence length 0 Max sequence length 1000 Average sequence length 258 Possible positions 644090 Oligonucleotide statistics: Total occurrences 542637 Position interval parameters: Position interval 20 Number of windows 50 Total positions 644090 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 6 120 2 -24 [-479,-460] -469.5 7 132 3 -23 [-459,-440] -449.5 10 178 4 -22 [-439,-420] -429.5 12 224 5 -21 [-419,-400] -409.5 16 286 6 -20 [-399,-380] -389.5 20 364 7 -19 [-379,-360] -369.5 22 404 8 -18 [-359,-340] -349.5 28 492 9 -17 [-339,-320] -329.5 38 670 10 -16 [-319,-300] -309.5 51 899 11 -15 [-299,-280] -289.5 64 1183 12 -14 [-279,-260] -269.5 84 1454 13 -13 [-259,-240] -249.5 112 2008 14 -12 [-239,-220] -229.5 149 2609 15 -11 [-219,-200] -209.5 206 3572 16 -10 [-199,-180] -189.5 303 5077 17 -9 [-179,-160] -169.5 436 7459 18 -8 [-159,-140] -149.5 656 10921 19 -7 [-139,-120] -129.5 1005 16527 20 -6 [-119,-100] -109.5 1634 26346 21 -5 [-99,-80] -89.5 2495 42780 22 -4 [-79,-60] -69.5 2495 49900 23 -3 [-59,-40] -49.5 2495 49900 24 -2 [-39,-20] -29.5 2495 49900 25 -1 [-19,0] -9.5 2495 49900 26 0 [1,20] 10.5 2495 49900 27 1 [21,40] 30.5 2495 49900 28 2 [41,60] 50.5 2495 49900 29 3 [61,80] 70.5 2495 49900 30 4 [81,100] 90.5 2495 41907 31 5 [101,120] 110.5 1596 25705 32 6 [121,140] 130.5 983 16175 33 7 [141,160] 150.5 636 10703 34 8 [161,180] 170.5 428 7315 35 9 [181,200] 190.5 300 4975 36 10 [201,220] 210.5 202 3510 37 11 [221,240] 230.5 148 2575 38 12 [241,260] 250.5 111 1985 39 13 [261,280] 270.5 84 1435 40 14 [281,300] 290.5 63 1174 41 15 [301,320] 310.5 51 883 42 16 [321,340] 330.5 38 662 43 17 [341,360] 350.5 28 487 44 18 [361,380] 370.5 22 404 45 19 [381,400] 390.5 20 359 46 20 [401,420] 410.5 16 281 47 21 [421,440] 430.5 12 224 48 22 [441,460] 450.5 10 175 49 23 [461,480] 470.5 7 131 50 24 [481,500] 490.5 6 120 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t | t | 200899 | 2251.2 | 49 | 0.0e+00 | 0 | 300 | 1 | 7 | 12 | 26 | 40 | 43 | 43 | 52 | 67 | 96 | 136 | 202 | 280 | 408 | 548 | 762 | 1286 | 2153 | 3115 | 5040 | 8266 | 13837 | 16266 | 16060 | 16387 | 15988 | 16132 | 16305 | 16236 | 16231 | 13547 | 7964 | 4677 | 2977 | 1941 | 1229 | 789 | 513 | 376 | 232 | 185 | 124 | 96 | 66 | 43 | 45 | 29 | 23 | 10 | 4 | 5 |
| a | a | 198741 | 2154.4 | 49 | 0.0e+00 | 0 | 300 | 2 | 8 | 12 | 45 | 56 | 57 | 60 | 49 | 58 | 97 | 124 | 207 | 284 | 395 | 512 | 786 | 1382 | 2083 | 3166 | 4944 | 8396 | 14188 | 16307 | 16213 | 15937 | 16194 | 15982 | 15888 | 15756 | 15629 | 13136 | 7665 | 4552 | 2814 | 1904 | 1256 | 748 | 560 | 368 | 264 | 205 | 127 | 82 | 63 | 55 | 42 | 34 | 18 | 19 | 10 | 4 |
| c | c | 71592 | 544.3 | 49 | 0.0e+00 | 0 | 300 | 3 | 12 | 15 | 15 | 23 | 27 | 29 | 29 | 31 | 51 | 42 | 81 | 96 | 163 | 207 | 309 | 481 | 695 | 1233 | 1836 | 3025 | 4966 | 5870 | 5709 | 5689 | 5658 | 5605 | 5611 | 5711 | 5838 | 4764 | 2788 | 1683 | 1039 | 758 | 471 | 321 | 202 | 153 | 90 | 63 | 43 | 41 | 31 | 23 | 17 | 13 | 14 | 9 | 6 | 6 |
| g | g | 71405 | 524.4 | 49 | 0.0e+00 | 0 | 300 | 4 | 20 | 13 | 12 | 21 | 33 | 49 | 27 | 29 | 49 | 50 | 91 | 122 | 152 | 210 | 342 | 462 | 768 | 1108 | 1805 | 2974 | 4979 | 5844 | 5787 | 5632 | 5692 | 5699 | 5588 | 5644 | 5738 | 4694 | 2824 | 1711 | 1100 | 677 | 448 | 293 | 216 | 139 | 101 | 65 | 35 | 35 | 29 | 17 | 20 | 21 | 13 | 10 | 11 | 6 |
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