/var/www/html/rsat/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171557_2025-12-18.171557_4Sppd9/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171557_2025-12-18.171557_4Sppd9/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title HG_0.01 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171557_2025-12-18.171557_4Sppd9/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171557_2025-12-18.171557_4Sppd9/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171557_2025-12-18.171557_4Sppd9/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	2495
	Sum of sequence lengths      	644090
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	258
	Possible positions           	641595
 Oligonucleotide statistics:
	Total occurrences    	539979
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	641595
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	6	120
	2	-24	[-479,-460]	-469.5	7	132
	3	-23	[-459,-440]	-449.5	10	178
	4	-22	[-439,-420]	-429.5	12	224
	5	-21	[-419,-400]	-409.5	16	286
	6	-20	[-399,-380]	-389.5	20	364
	7	-19	[-379,-360]	-369.5	22	404
	8	-18	[-359,-340]	-349.5	28	492
	9	-17	[-339,-320]	-329.5	38	670
	10	-16	[-319,-300]	-309.5	51	899
	11	-15	[-299,-280]	-289.5	64	1183
	12	-14	[-279,-260]	-269.5	84	1454
	13	-13	[-259,-240]	-249.5	112	2008
	14	-12	[-239,-220]	-229.5	149	2609
	15	-11	[-219,-200]	-209.5	206	3572
	16	-10	[-199,-180]	-189.5	303	5077
	17	-9	[-179,-160]	-169.5	436	7459
	18	-8	[-159,-140]	-149.5	656	10921
	19	-7	[-139,-120]	-129.5	1005	16527
	20	-6	[-119,-100]	-109.5	1634	26346
	21	-5	[-99,-80]	-89.5	2495	42780
	22	-4	[-79,-60]	-69.5	2495	49900
	23	-3	[-59,-40]	-49.5	2495	49900
	24	-2	[-39,-20]	-29.5	2495	49900
	25	-1	[-19,0]	-9.5	2495	49900
	26	0	[1,20]	10.5	2495	49900
	27	1	[21,40]	30.5	2495	49900
	28	2	[41,60]	50.5	2495	49900
	29	3	[61,80]	70.5	2495	49900
	30	4	[81,100]	90.5	2495	41008
	31	5	[101,120]	110.5	1575	25092
	32	6	[121,140]	130.5	972	15828
	33	7	[141,160]	150.5	627	10495
	34	8	[161,180]	170.5	424	7187
	35	9	[181,200]	190.5	296	4877
	36	10	[201,220]	210.5	200	3456
	37	11	[221,240]	230.5	145	2538
	38	12	[241,260]	250.5	110	1958
	39	13	[261,280]	270.5	82	1414
	40	14	[281,300]	290.5	63	1162
	41	15	[301,320]	310.5	50	870
	42	16	[321,340]	330.5	38	652
	43	17	[341,360]	350.5	28	481
	44	18	[361,380]	370.5	22	402
	45	19	[381,400]	390.5	20	355
	46	20	[401,420]	410.5	16	277
	47	21	[421,440]	430.5	12	222
	48	22	[441,460]	450.5	10	172
	49	23	[461,480]	470.5	7	130
	50	24	[481,500]	490.5	6	114

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
tt tt 76444 1325.5 49 0.0e+00 0 300 1 2 2 4 12 9 11 14 19 31 49 68 88 143 210 276 465 792 1082 1825 2918 4803 6310 6285 6403 6101 6260 6442 6550 6522 5005 2934 1687 1105 719 441 262 183 133 85 52 37 33 24 15 14 10 6 1 1 1
aa aa 75107 1158.2 49 0.0e+00 0 300 2 2 1 18 23 21 11 13 20 31 47 60 101 137 180 268 535 739 1133 1725 3045 5201 6312 6436 6209 6332 6083 6187 6170 5991 4653 2729 1616 987 687 457 266 207 137 95 75 55 22 24 22 14 16 3 8 3 0
ta ta 66319 758.9 49 0.0e+00 0 300 3 1 5 14 16 18 16 18 29 27 46 69 93 135 173 247 441 751 1106 1780 2911 5059 5297 5185 5354 5339 5336 5228 5084 5071 4468 2634 1506 976 625 388 263 169 129 84 82 49 36 19 12 11 6 5 6 2 0
at at 71080 729.0 49 0.0e+00 0 300 4 2 4 16 17 25 24 17 25 35 46 74 126 156 192 272 517 825 1170 1861 3131 5342 5645 5563 5667 5732 5677 5682 5479 5484 4782 2803 1632 1004 678 455 269 198 125 87 76 53 33 15 17 19 12 7 5 1 3
ag ag 27710 331.5 49 1.4e-43 2.2e-42 41.66 5 3 6 6 8 4 13 10 10 15 16 38 31 46 75 129 168 276 426 694 1176 1922 2357 2265 2149 2240 2302 2162 2211 2248 1850 1037 656 423 244 148 102 75 44 42 25 8 15 8 8 5 2 5 4 3 0
ca ca 29843 327.1 49 9.1e-43 1.5e-41 40.84 6 3 3 6 12 7 10 8 3 19 15 40 39 54 82 144 220 271 522 745 1269 2056 2474 2429 2369 2398 2434 2358 2376 2441 1941 1122 660 417 311 212 112 90 55 35 20 11 11 11 8 7 4 7 1 0 1
ct ct 28429 319.1 49 2.8e-41 4.4e-40 39.35 7 0 4 3 4 3 2 11 14 16 19 29 37 75 78 98 165 281 476 755 1206 2012 2338 2234 2325 2224 2230 2264 2319 2340 1878 1087 648 414 291 172 126 58 60 27 28 17 19 16 9 7 3 5 2 0 0
tg tg 30375 274.5 49 4.0e-33 6.4e-32 31.19 8 2 1 4 4 9 11 9 8 16 27 37 55 64 84 119 204 330 459 785 1285 2141 2469 2491 2443 2414 2402 2477 2431 2404 1963 1164 735 445 285 182 125 86 61 35 27 17 13 12 9 9 10 6 3 1 2
tc tc 26751 262.3 49 6.3e-31 1e-29 28.99 9 2 4 4 8 7 5 10 11 20 14 26 43 62 81 119 173 275 462 644 1140 1821 2181 2089 2180 2128 2132 2153 2165 2228 1772 989 630 382 267 184 120 67 47 24 20 17 12 9 6 8 3 5 0 0 2
ga ga 26455 238.2 49 1.1e-26 1.8e-25 24.74 10 2 5 5 4 13 23 7 7 17 15 34 51 55 76 128 183 275 417 671 1153 1846 2234 2093 2052 2104 2096 2153 2098 2162 1716 985 630 389 239 156 100 79 44 43 24 10 9 11 12 9 7 3 4 4 2
gt gt 24280 237.0 49 1.8e-26 2.9e-25 24.54 11 4 1 3 5 6 6 10 8 15 20 35 31 42 59 123 158 275 392 638 1044 1763 1986 1983 1951 1945 1990 1879 1874 1886 1562 943 580 381 232 127 102 69 43 36 23 14 11 7 2 4 4 4 1 2 1
ac ac 24126 199.7 49 4.3e-20 6.8e-19 18.17 12 1 1 5 7 7 8 7 3 13 13 35 26 51 63 114 161 237 436 654 1033 1710 1980 1934 1903 1883 1915 1852 1890 1902 1619 961 561 352 269 168 103 72 57 36 26 10 11 15 7 4 3 3 2 3 0
gc gc 9460 105.6 49 5.0e-06 7.9e-05 4.10 13 4 4 3 6 5 6 4 7 6 8 9 14 23 30 29 62 89 133 243 356 653 801 801 754 767 720 751 791 785 596 375 210 127 82 65 35 26 24 7 9 7 9 4 2 2 6 5 3 2 0
cc cc 10820 96.1 49 6.8e-05 0.0011 2.96 14 4 5 5 2 9 7 8 8 11 5 8 14 25 32 52 73 106 191 272 472 769 879 888 847 879 818 854 882 897 674 377 263 138 118 51 58 32 23 14 11 9 8 3 5 3 1 1 4 2 3
gg gg 10804 94.6 49 9.9e-05 0.0016 2.80 15 9 3 1 5 9 14 6 6 11 6 11 26 31 42 61 56 126 165 249 417 710 818 902 873 871 884 800 877 901 695 442 236 173 109 91 51 35 28 15 7 3 5 6 1 5 4 1 1 3 3
cg cg 1976 42.8 49 7.2e-01 12 -1.06 16 4 3 1 4 8 10 2 6 5 3 4 5 7 12 15 18 37 39 61 73 123 171 151 145 154 120 131 129 159 117 76 50 38 15 20 12 12 4 8 3 6 1 1 1 0 5 1 2 3 1 
 Host name	rsat
 Job started	2025-12-18.171607
 Job done	2025-12-18.171610
 Seconds	3.74
	user	3.74
	system	0.01
	cuser	0
;	csystem	0