compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171557_2025-12-18.171557_4Sppd9/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171557_2025-12-18.171557_4Sppd9/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab Program version 1.118 Quick mode Input files file1 $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171557_2025-12-18.171557_4Sppd9/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171557_2025-12-18.171557_4Sppd9/results/discovered_motifs/peak-motifs_motifs_discovered.tf Output files html_index $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171557_2025-12-18.171557_4Sppd9/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html match_table_html $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171557_2025-12-18.171557_4Sppd9/results/discovered_motifs/peak-motifs_motifs_disco_compa.html prefix $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171557_2025-12-18.171557_4Sppd9/results/discovered_motifs/peak-motifs_motifs_disco_compa match_table_txt $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171557_2025-12-18.171557_4Sppd9/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab alignments_1ton $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171557_2025-12-18.171557_4Sppd9/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab alignments_1ton_html $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171557_2025-12-18.171557_4Sppd9/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html Matrices file1 16 matrices $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171557_2025-12-18.171557_4Sppd9/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 1 12 3372 file1 2 20 336 file1 3 14 1959 file1 4 16 1018 file1 5 14 2000 file1 6 14 1150 file1 7 15 488 file1 8 14 1192 file1 9 10 1871 file1 10 10 2288 file1 11 16 2540 ... 6 more matrices file2 16 matrices $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.171557_2025-12-18.171557_4Sppd9/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 1 12 3372 file2 2 20 336 file2 3 14 1959 file2 4 16 1018 file2 5 14 2000 file2 6 14 1150 file2 7 15 488 file2 8 14 1192 file2 9 10 1871 file2 10 10 2288 file2 11 16 2540 ... 6 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_7nt_mkv4_m4 | oligos_7nt_mkv4_m4 | oligos_7nt_mkv4_m4 | oligos_7nt_mkv4_m4 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv3_m5 | oligos_6nt_mkv3_m5 | oligos_6nt_mkv3_m5 | oligos_6nt_mkv3_m5 | 1.000 | 1.000 | 14 | 14 | 14 | 14 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv4_m3 | oligos_7nt_mkv4_m3 | oligos_7nt_mkv4_m3 | oligos_7nt_mkv4_m3 | 1.000 | 1.000 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m5 | positions_6nt_m5 | positions_6nt_m5 | positions_6nt_m5 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv3_m3 | oligos_6nt_mkv3_m3 | oligos_6nt_mkv3_m3 | oligos_6nt_mkv3_m3 | 1.000 | 1.000 | 14 | 14 | 14 | 14 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_7nt_m1 | positions_7nt_m1 | positions_7nt_m1 | positions_7nt_m1 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv4_m1 | oligos_7nt_mkv4_m1 | oligos_7nt_mkv4_m1 | oligos_7nt_mkv4_m1 | 1.000 | 1.000 | 16 | 16 | 16 | 16 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv3_m2 | oligos_6nt_mkv3_m2 | oligos_6nt_mkv3_m2 | oligos_6nt_mkv3_m2 | 1.000 | 1.000 | 20 | 20 | 20 | 20 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m2 | positions_6nt_m2 | positions_6nt_m2 | positions_6nt_m2 | 1.000 | 1.000 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m4 | positions_6nt_m4 | positions_6nt_m4 | positions_6nt_m4 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv4_m2 | oligos_7nt_mkv4_m2 | oligos_7nt_mkv4_m2 | oligos_7nt_mkv4_m2 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m1 | positions_6nt_m1 | positions_6nt_m1 | positions_6nt_m1 | 1.000 | 1.000 | 14 | 14 | 14 | 14 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv3_m1 | oligos_6nt_mkv3_m1 | oligos_6nt_mkv3_m1 | oligos_6nt_mkv3_m1 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m3 | positions_6nt_m3 | positions_6nt_m3 | positions_6nt_m3 | 1.000 | 1.000 | 14 | 14 | 14 | 14 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv4_m5 | oligos_7nt_mkv4_m5 | oligos_7nt_mkv4_m5 | oligos_7nt_mkv4_m5 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv3_m4 | oligos_6nt_mkv3_m4 | oligos_6nt_mkv3_m4 | oligos_6nt_mkv3_m4 | 1.000 | 1.000 | 16 | 16 | 16 | 16 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m1 | positions_6nt_m3 | positions_6nt_m1 | positions_6nt_m3 | 0.891 | 0.891 | 14 | 14 | 14 | 14 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m3 | positions_6nt_m1 | positions_6nt_m3 | positions_6nt_m1 | 0.891 | 0.891 | 14 | 14 | 14 | 14 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv3_m5 | oligos_7nt_mkv4_m1 | oligos_6nt_mkv3_m5 | oligos_7nt_mkv4_m1 | 0.994 | 0.869 | 14 | 16 | 14 | 16 | 0.8750 | 1.0000 | 0.8750 | R | -2 |
| oligos_7nt_mkv4_m1 | oligos_6nt_mkv3_m5 | oligos_7nt_mkv4_m1 | oligos_6nt_mkv3_m5 | 0.994 | 0.869 | 16 | 14 | 14 | 16 | 0.8750 | 0.8750 | 1.0000 | R | 0 |
| positions_6nt_m1 | positions_6nt_m2 | positions_6nt_m1 | positions_6nt_m2 | 0.872 | 0.814 | 14 | 15 | 14 | 15 | 0.9333 | 1.0000 | 0.9333 | D | -1 |
| positions_6nt_m2 | positions_6nt_m1 | positions_6nt_m2 | positions_6nt_m1 | 0.872 | 0.814 | 15 | 14 | 14 | 15 | 0.9333 | 0.9333 | 1.0000 | D | 1 |
| oligos_6nt_mkv3_m3 | oligos_7nt_mkv4_m2 | oligos_6nt_mkv3_m3 | oligos_7nt_mkv4_m2 | 0.991 | 0.778 | 14 | 11 | 11 | 14 | 0.7857 | 0.7857 | 1.0000 | R | 1 |
| oligos_7nt_mkv4_m2 | oligos_6nt_mkv3_m3 | oligos_7nt_mkv4_m2 | oligos_6nt_mkv3_m3 | 0.991 | 0.778 | 11 | 14 | 11 | 14 | 0.7857 | 1.0000 | 0.7857 | R | -2 |
| positions_6nt_m2 | positions_6nt_m3 | positions_6nt_m2 | positions_6nt_m3 | 0.771 | 0.720 | 15 | 14 | 14 | 15 | 0.9333 | 0.9333 | 1.0000 | D | 1 |
| positions_6nt_m3 | positions_6nt_m2 | positions_6nt_m3 | positions_6nt_m2 | 0.771 | 0.720 | 14 | 15 | 14 | 15 | 0.9333 | 1.0000 | 0.9333 | D | -1 |
| oligos_7nt_mkv4_m3 | oligos_6nt_mkv3_m4 | oligos_7nt_mkv4_m3 | oligos_6nt_mkv3_m4 | 0.880 | 0.715 | 13 | 16 | 13 | 16 | 0.8125 | 1.0000 | 0.8125 | D | 0 |
| oligos_6nt_mkv3_m4 | oligos_7nt_mkv4_m3 | oligos_6nt_mkv3_m4 | oligos_7nt_mkv4_m3 | 0.880 | 0.715 | 16 | 13 | 13 | 16 | 0.8125 | 0.8125 | 1.0000 | D | 0 |
| positions_6nt_m5 | oligos_7nt_mkv4_m3 | positions_6nt_m5 | oligos_7nt_mkv4_m3 | 0.915 | 0.704 | 10 | 13 | 10 | 13 | 0.7692 | 1.0000 | 0.7692 | D | -1 |
| oligos_7nt_mkv4_m3 | positions_6nt_m5 | oligos_7nt_mkv4_m3 | positions_6nt_m5 | 0.915 | 0.704 | 13 | 10 | 10 | 13 | 0.7692 | 0.7692 | 1.0000 | D | 1 |
| positions_7nt_m1 | oligos_6nt_mkv3_m1 | positions_7nt_m1 | oligos_6nt_mkv3_m1 | 0.804 | 0.680 | 12 | 12 | 11 | 13 | 0.8462 | 0.9167 | 0.9167 | R | 1 |
| oligos_6nt_mkv3_m1 | positions_7nt_m1 | oligos_6nt_mkv3_m1 | positions_7nt_m1 | 0.804 | 0.680 | 12 | 12 | 11 | 13 | 0.8462 | 0.9167 | 0.9167 | D | 1 |
| oligos_6nt_mkv3_m5 | oligos_7nt_mkv4_m4 | oligos_6nt_mkv3_m5 | oligos_7nt_mkv4_m4 | 0.727 | 0.624 | 14 | 12 | 12 | 14 | 0.8571 | 0.8571 | 1.0000 | R | 0 |
| oligos_7nt_mkv4_m4 | oligos_6nt_mkv3_m5 | oligos_7nt_mkv4_m4 | oligos_6nt_mkv3_m5 | 0.727 | 0.624 | 12 | 14 | 12 | 14 | 0.8571 | 1.0000 | 0.8571 | R | -2 |
| oligos_6nt_mkv3_m1 | oligos_6nt_mkv3_m3 | oligos_6nt_mkv3_m1 | oligos_6nt_mkv3_m3 | 0.702 | 0.602 | 12 | 14 | 12 | 14 | 0.8571 | 1.0000 | 0.8571 | D | -2 |
| oligos_6nt_mkv3_m3 | oligos_6nt_mkv3_m1 | oligos_6nt_mkv3_m3 | oligos_6nt_mkv3_m1 | 0.702 | 0.602 | 14 | 12 | 12 | 14 | 0.8571 | 0.8571 | 1.0000 | D | 2 |
| positions_6nt_m3 | oligos_6nt_mkv3_m2 | positions_6nt_m3 | oligos_6nt_mkv3_m2 | 0.836 | 0.585 | 14 | 20 | 14 | 20 | 0.7000 | 1.0000 | 0.7000 | R | -5 |
| oligos_6nt_mkv3_m2 | positions_6nt_m3 | oligos_6nt_mkv3_m2 | positions_6nt_m3 | 0.836 | 0.585 | 20 | 14 | 14 | 20 | 0.7000 | 0.7000 | 1.0000 | R | 1 |
| oligos_7nt_mkv4_m4 | oligos_7nt_mkv4_m1 | oligos_7nt_mkv4_m4 | oligos_7nt_mkv4_m1 | 0.769 | 0.576 | 12 | 16 | 12 | 16 | 0.7500 | 1.0000 | 0.7500 | D | -2 |
| oligos_7nt_mkv4_m1 | oligos_7nt_mkv4_m4 | oligos_7nt_mkv4_m1 | oligos_7nt_mkv4_m4 | 0.769 | 0.576 | 16 | 12 | 12 | 16 | 0.7500 | 0.7500 | 1.0000 | D | 2 |
| positions_6nt_m5 | oligos_6nt_mkv3_m4 | positions_6nt_m5 | oligos_6nt_mkv3_m4 | 0.912 | 0.570 | 10 | 16 | 10 | 16 | 0.6250 | 1.0000 | 0.6250 | D | -1 |
| oligos_6nt_mkv3_m4 | positions_6nt_m5 | oligos_6nt_mkv3_m4 | positions_6nt_m5 | 0.912 | 0.570 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | D | 1 |
| oligos_6nt_mkv3_m2 | positions_6nt_m1 | oligos_6nt_mkv3_m2 | positions_6nt_m1 | 0.742 | 0.519 | 20 | 14 | 14 | 20 | 0.7000 | 0.7000 | 1.0000 | D | 5 |
| positions_6nt_m1 | oligos_6nt_mkv3_m2 | positions_6nt_m1 | oligos_6nt_mkv3_m2 | 0.742 | 0.519 | 14 | 20 | 14 | 20 | 0.7000 | 1.0000 | 0.7000 | D | -5 |
| oligos_6nt_mkv3_m2 | positions_6nt_m2 | oligos_6nt_mkv3_m2 | positions_6nt_m2 | 0.719 | 0.479 | 20 | 15 | 14 | 21 | 0.6667 | 0.7000 | 0.9333 | D | 6 |
| positions_6nt_m2 | oligos_6nt_mkv3_m2 | positions_6nt_m2 | oligos_6nt_mkv3_m2 | 0.719 | 0.479 | 15 | 20 | 14 | 21 | 0.6667 | 0.9333 | 0.7000 | D | -6 |
| positions_6nt_m2 | positions_6nt_m4 | positions_6nt_m2 | positions_6nt_m4 | 0.718 | 0.479 | 15 | 10 | 10 | 15 | 0.6667 | 0.6667 | 1.0000 | R | 0 |
| positions_6nt_m4 | positions_6nt_m2 | positions_6nt_m4 | positions_6nt_m2 | 0.718 | 0.479 | 10 | 15 | 10 | 15 | 0.6667 | 1.0000 | 0.6667 | R | -5 |
Host name rsat Job started 2025-12-18.171656 Job done 2025-12-18.171709 Seconds 1.18 user 1.18 system 0.44 cuser 10.32 ; csystem 1.48