peak-motifs HG

motif discovery

oligos_6nt_mkv3

oligos_6nt_mkv3_m1	assembly: atacatat (sig=29.96; e-value=1.1e-30)	RC: atatgtat
oligos_6nt_mkv3_m2	assembly: tttattttaaaataaa (sig=25.57; e-value=2.7e-26)	RC: tttattttaaaataaa
oligos_6nt_mkv3_m3	assembly: agatagataa (sig=14.73; e-value=1.9e-15)	RC: ttatctatct
oligos_6nt_mkv3_m4	assembly: aagaaaacaaaa (sig=13.85; e-value=1.4e-14)	RC: ttttgttttctt
oligos_6nt_mkv3_m5	assembly: tcgaatggat (sig=6.25; e-value=5.6e-07)	RC: atccattcga

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_6nt

positions_6nt_m1	assembly: ttaaaaatat (sig=7.34; e-value=4.6e-08)	RC: atatttttaa
positions_6nt_m2	assembly: ttaaaaaatat (sig=7.34; e-value=4.6e-08)	RC: atattttttaa
positions_6nt_m3	assembly: ttaaaaataa (sig=7.34; e-value=4.6e-08)	RC: ttatttttaa
positions_6nt_m4	assembly: tattaa (sig=1.00; e-value=0.1)	RC: ttaata
positions_6nt_m5	assembly: agaaaa (sig=0.76; e-value=0.17)	RC: ttttct

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

oligos_7nt_mkv4

oligos_7nt_mkv4_m1	assembly: ttccattcgatg (sig=15.82; e-value=1.5e-16)	RC: catcgaatggaa
oligos_7nt_mkv4_m2	assembly: atctatc (sig=7.86; e-value=1.4e-08)	RC: gatagat
oligos_7nt_mkv4_m3	assembly: aagaaaaaa (sig=5.08; e-value=8.3e-06)	RC: ttttttctt
oligos_7nt_mkv4_m4	assembly: cgattcca (sig=4.72; e-value=1.9e-05)	RC: tggaatcg
oligos_7nt_mkv4_m5	assembly: actataa (sig=4.51; e-value=3.1e-05)	RC: ttatagt

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_7nt

positions_7nt_m1	assembly: tatatata (sig=0.13; e-value=0.74)	RC: tatatata
positions_7nt_m2	: (sig=; e-value=1)	RC:
positions_7nt_m3	: (sig=; e-value=1)	RC:
positions_7nt_m4	: (sig=; e-value=1)	RC:
positions_7nt_m5	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

Motif discovery

Motif 1 oligos_6nt_mkv3_m1

k-mer sig=29.96; evalue=1.1e-30

atataCatatat

ATATATGTATAT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 408 (16.35%)
Max nb of predicted sites per peak: 49
(chromosome_GRCh38_12_1_133275309_1:127545192-127545756())
Mean nb of predicted sites per peak: 3.57

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv3_m2

k-mer sig=25.57; evalue=2.7e-26

wdtttattttaaaataaamw

WKTTTATTTTAAAATAAAHW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 64 (2.57%)
Max nb of predicted sites per peak: 2
(chromosome_GRCh38_9_1_138394717_1:41536190-41536446())
Mean nb of predicted sites per peak: 2.00

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv3_m3

k-mer sig=14.73; evalue=1.9e-15

ataGataGatarat

ATYTATCTATCTAT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 186 (7.45%)
Max nb of predicted sites per peak: 109
(chromosome_GRCh38_8_1_145138636_1:68906109-68907024())
Mean nb of predicted sites per peak: 7.10

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv3_m4

k-mer sig=13.85; evalue=1.4e-14

rraaGaaaaCaaaara

TYTTTTGTTTTCTTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 297 (11.90%)
Max nb of predicted sites per peak: 4
(chromosome_GRCh38_X_1_156040895_1:33604402-33604593())
Mean nb of predicted sites per peak: 1.19

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv3_m5

k-mer sig=6.25; evalue=5.6e-07

matSGaatGGaatS

SATTCCATTCSATK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 112 (4.49%)
Max nb of predicted sites per peak: 101
(chromosome_GRCh38_4_1_190214555_1:49149166-49149814())
Mean nb of predicted sites per peak: 21.50

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=7.34; evalue=4.6e-08

ttttaaaaatatrt

AYATATTTTTAAAA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 102 (4.09%)
Max nb of predicted sites per peak: 2
(chromosome_GRCh38_2_1_242193529_1:184175527-184175749())
Mean nb of predicted sites per peak: 1.01

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=7.34; evalue=4.6e-08

htttaaaaaatatdt

AHATATTTTTTAAAD

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 196 (7.86%)
Max nb of predicted sites per peak: 2
(chromosome_GRCh38_9_1_138394717_1:41911715-41911979())
Mean nb of predicted sites per peak: 1.07

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=7.34; evalue=4.6e-08

atttaaaaataaaa

TTTTATTTTTAAAT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 68 (2.73%)
Max nb of predicted sites per peak: 6
(chromosome_GRCh38_6_1_170805979_1:77603226-77603503())
Mean nb of predicted sites per peak: 1.09

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=1.00; evalue=0.1

yatAttAAwa

TWTTAATATR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6 (0.24%)
Max nb of predicted sites per peak: 9
(chromosome_GRCh38_2_1_242193529_1:218971728-218972055())
Mean nb of predicted sites per peak: 2.33

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

k-mer sig=0.76; evalue=0.17

rvAGAAAArr

YYTTTTCTBY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 48 (1.92%)
Max nb of predicted sites per peak: 2
(chromosome_GRCh38_21_1_46709983_1:8219764-8220201())
Mean nb of predicted sites per peak: 1.02

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv4_m1

k-mer sig=15.82; evalue=1.5e-16

SattCCattCSatKMY

RKMATSGAATGGAATS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 113 (4.53%)
Max nb of predicted sites per peak: 110
(chromosome_GRCh38_4_1_190214555_1:49149166-49149814())
Mean nb of predicted sites per peak: 24.39

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv4_m2

k-mer sig=7.86; evalue=1.4e-08

ctatCtatCta

TAGATAGATAG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 160 (6.41%)
Max nb of predicted sites per peak: 79
(chromosome_GRCh38_8_1_145138636_1:68906109-68907024())
Mean nb of predicted sites per peak: 6.40

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv4_m3

k-mer sig=5.08; evalue=8.3e-06

rraaGaaaaaarr

YYTTTTTTCTTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 213 (8.54%)
Max nb of predicted sites per peak: 10
(chromosome_GRCh38_21_1_46709983_1:8219764-8220201())
Mean nb of predicted sites per peak: 1.16

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv4_m4

k-mer sig=4.72; evalue=1.9e-05

ktCSattCCatt

AATGGAATSGAM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 128 (5.13%)
Max nb of predicted sites per peak: 93
(chromosome_GRCh38_4_1_190214555_1:49149166-49149814())
Mean nb of predicted sites per peak: 13.84

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv4_m5

k-mer sig=4.51; evalue=3.1e-05

sgaCtAtaama

TKTTATAGTCS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 255 (10.22%)
Max nb of predicted sites per peak: 4
(chromosome_GRCh38_12_1_133275309_1:67688400-67688671())
Mean nb of predicted sites per peak: 1.08

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

k-mer sig=0.13; evalue=0.74

yrtAtAtAtAyr

YRTATATATAYR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 263 (10.54%)
Max nb of predicted sites per peak: 190
(chromosome_GRCh38_5_1_181538259_1:4285637-4286361())
Mean nb of predicted sites per peak: 10.64

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: HG_0.01 (18/12/2025 17:17)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results