/var/www/html/rsat/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.182740_2025-12-18.182740_GY2nZ7/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.182740_2025-12-18.182740_GY2nZ7/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.182740_2025-12-18.182740_GY2nZ7/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.182740_2025-12-18.182740_GY2nZ7/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.182740_2025-12-18.182740_GY2nZ7/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.182740_2025-12-18.182740_GY2nZ7/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.182740_2025-12-18.182740_GY2nZ7/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.182740_2025-12-18.182740_GY2nZ7/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.182740_2025-12-18.182740_GY2nZ7/results/discovered_motifs/peak-motifs_motifs_disco_compa
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.182740_2025-12-18.182740_GY2nZ7/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.182740_2025-12-18.182740_GY2nZ7/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.182740_2025-12-18.182740_GY2nZ7/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	16	54
		file1	2	12	298
		file1	3	12	173
		file1	4	10	167
		file1	5	11	222
		file1	6	17	71
		file1	7	16	104
		file1	8	17	64
		file1	9	11	104
		file1	10	11	238
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.182740_2025-12-18.182740_GY2nZ7/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		16		54
		file2		2		12		298
		file2		3		12		173
		file2		4		10		167
		file2		5		11		222
		file2		6		17		71
		file2		7		16		104
		file2		8		17		64
		file2		9		11		104
		file2		10		11		238
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m5 0.879 0.732 11 11 10 12 0.8333 0.9091 0.9091 D 1
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m5 0.879 0.732 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m2 0.934 0.700 12 16 12 16 0.7500 1.0000 0.7500 R -3
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m3 0.934 0.700 16 12 12 16 0.7500 0.7500 1.0000 R 1
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m3 0.779 0.649 10 12 10 12 0.8333 1.0000 0.8333 D 0
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m4 0.779 0.649 12 10 10 12 0.8333 0.8333 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m1 0.803 0.567 12 17 12 17 0.7059 1.0000 0.7059 R -4
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m3 0.803 0.567 17 12 12 17 0.7059 0.7059 1.0000 R 1
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m1 0.705 0.529 12 16 12 16 0.7500 1.0000 0.7500 R 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m3 0.705 0.529 16 12 12 16 0.7500 0.7500 1.0000 R 4
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 0.893 0.510 16 17 12 21 0.5714 0.7500 0.7059 D -5
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 0.893 0.510 17 16 12 21 0.5714 0.7059 0.7500 D 5
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m1 0.800 0.470 10 17 10 17 0.5882 1.0000 0.5882 R -4
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m4 0.800 0.470 17 10 10 17 0.5882 0.5882 1.0000 R 3
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m2 0.705 0.440 10 16 10 16 0.6250 1.0000 0.6250 R -3
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m4 0.705 0.440 16 10 10 16 0.6250 0.6250 1.0000 R 3
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 0.717 0.430 16 16 12 20 0.6000 0.7500 0.7500 R 4
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 0.717 0.430 16 16 12 20 0.6000 0.7500 0.7500 R 4 
 Host name	rsat
 Job started	2025-12-18.182804
 Job done	2025-12-18.182810
 Seconds	0.3
	user	0.31
	system	0.24
	cuser	5.18
;	csystem	0.83