peak-motifs MITF

Motif discovery

Motif 1 oligos_6nt_mkv4_m1

k-mer sig=91.85; evalue=1.4e-92

ttCTTTTCTTttt

AAAAAGAAAAGAA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9631 (11.67%)
Max nb of predicted sites per peak: 14
(chromosome_GRCh38_12_1_133275309_1:124837338-124837723())
Mean nb of predicted sites per peak: 1.30

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv4_m2

k-mer sig=65.95; evalue=1.1e-66

awaCAAAACwm

KWGTTTTGTWT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4189 (5.08%)
Max nb of predicted sites per peak: 9
(chromosome_GRCh38_20_1_64444167_1:41015142-41015414())
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv4_m3

k-mer sig=64.00; evalue=1e-64

aaAAATTAgm

KCTAATTTTT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 15090 (18.29%)
Max nb of predicted sites per peak: 7
(chromosome_GRCh38_13_1_114364328_1:33496137-33496320())
Mean nb of predicted sites per peak: 1.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv4_m4

k-mer sig=60.44; evalue=3.6e-61

wwtATTTTAtw

WATAAAATAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9805 (11.88%)
Max nb of predicted sites per peak: 46
(chromosome_GRCh38_2_1_242193529_1:16146283-16146707())
Mean nb of predicted sites per peak: 1.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv4_m5

k-mer sig=53.67; evalue=2.1e-54

srGGCtGGGCgs

SCGCCCAGCCYS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 12841 (15.56%)
Max nb of predicted sites per peak: 27
(chromosome_GRCh38_1_1_248956422_1:205227769-205228227())
Mean nb of predicted sites per peak: 1.62

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=37.70; evalue=2e-38

vrGtCACGTGaCyb

VRGTCACGTGACYB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3005 (3.64%)
Max nb of predicted sites per peak: 12
(chromosome_GRCh38_2_1_242193529_1:503034-503229())
Mean nb of predicted sites per peak: 2.13

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=11.66; evalue=2.2e-12

ssaGGCTGGGCassr

YSSTGCCCAGCCTSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 14339 (17.38%)
Max nb of predicted sites per peak: 34
(chromosome_GRCh38_1_1_248956422_1:205227769-205228227())
Mean nb of predicted sites per peak: 1.64

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=11.66; evalue=2.2e-12

bsctGCCCaGGCgss

SSCGCCTGGGCAGSV

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 14110 (17.10%)
Max nb of predicted sites per peak: 52
(chromosome_GRCh38_13_1_114364328_1:36920151-36920809())
Mean nb of predicted sites per peak: 1.94

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=10.33; evalue=4.7e-11

cscGCCtGGCCmv

BKGGCCAGGCGSG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 13225 (16.03%)
Max nb of predicted sites per peak: 39
(chromosome_GRCh38_1_1_248956422_1:205227769-205228227())
Mean nb of predicted sites per peak: 1.93

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

k-mer sig=5.65; evalue=2.2e-06

aaAAAAAAaaa

TTTTTTTTTTT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 12299 (14.90%)
Max nb of predicted sites per peak: 53
(chromosome_GRCh38_11_1_135086622_1:29739629-29739867())
Mean nb of predicted sites per peak: 5.87

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv5_m1

k-mer sig=163.54; evalue=2.9e-164

dtATTTTTAaww

WWTTAAAAATAH

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10623 (12.87%)
Max nb of predicted sites per peak: 11
(chromosome_GRCh38_2_1_242193529_1:150023989-150024164())
Mean nb of predicted sites per peak: 1.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv5_m2

k-mer sig=66.66; evalue=2.2e-67

awACAAAAACwa

TWGTTTTTGTWT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8489 (10.29%)
Max nb of predicted sites per peak: 6
(chromosome_GRCh38_3_1_198295559_1:125732585-125732853())
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv5_m3

k-mer sig=36.96; evalue=1.1e-37

ttTTCTTTTTCyt

ARGAAAAAGAAAA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9510 (11.52%)
Max nb of predicted sites per peak: 35
(chromosome_GRCh38_6_1_170805979_1:50708248-50708441())
Mean nb of predicted sites per peak: 1.29

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv5_m4

k-mer sig=35.87; evalue=1.3e-36

cyCTGTCTChm

KDGAGACAGRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10864 (13.16%)
Max nb of predicted sites per peak: 28
(chromosome_GRCh38_6_1_170805979_1:468933-469277())
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv5_m5

k-mer sig=33.62; evalue=2.4e-34

swCTGTGTCwc

GWGACACAGWS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6457 (7.82%)
Max nb of predicted sites per peak: 14
(chromosome_GRCh38_22_1_50818468_1:44299894-44300180())
Mean nb of predicted sites per peak: 1.09

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

k-mer sig=300; evalue=1e-300

srgrTCACGTGAycys

SRGRTCACGTGAYCYS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6588 (7.98%)
Max nb of predicted sites per peak: 14
(chromosome_GRCh38_2_1_242193529_1:503034-503229())
Mean nb of predicted sites per peak: 2.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

k-mer sig=300; evalue=1e-300

grgvTCACGTGAksy

RSMTCACGTGABCYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8467 (10.26%)
Max nb of predicted sites per peak: 14
(chromosome_GRCh38_2_1_242193529_1:503034-503229())
Mean nb of predicted sites per peak: 1.70

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 positions_7nt_m3

k-mer sig=300; evalue=1e-300

ssggtCACGTGgbs

SVCCACGTGACCSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 5929 (7.18%)
Max nb of predicted sites per peak: 16
(chromosome_GRCh38_16_1_90338345_1:544682-545086())
Mean nb of predicted sites per peak: 1.59

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 positions_7nt_m4

k-mer sig=6.54; evalue=2.9e-07

gtGAGCCACcg

CGGTGGCTCAC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9628 (11.67%)
Max nb of predicted sites per peak: 6
(chromosome_GRCh38_1_1_248956422_1:1502305-1503463())
Mean nb of predicted sites per peak: 1.10

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 positions_7nt_m5

k-mer sig=6.07; evalue=8.5e-07

aaAAAAAAAaa

TTTTTTTTTTT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11599 (14.06%)
Max nb of predicted sites per peak: 51
(chromosome_GRCh38_11_1_135086622_1:29739629-29739867())
Mean nb of predicted sites per peak: 5.87

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: MITF_1 (18/12/2025 19:05)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results