peak-motifs MITF

Motif discovery

Motif 1 oligos_6nt_mkv4_m1

k-mer sig=81.92; evalue=1.2e-82

ttCTTTTCTTttt

AAAAAGAAAAGAA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9042 (11.71%)
Max nb of predicted sites per peak: 14
(chromosome_GRCh38_12_1_133275309_1:124837350-124837732())
Mean nb of predicted sites per peak: 1.30

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv4_m2

k-mer sig=60.97; evalue=1.1e-61

awaCAAAACwm

KWGTTTTGTWT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4008 (5.19%)
Max nb of predicted sites per peak: 8
(chromosome_GRCh38_1_1_248956422_1:151593954-151594165())
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv4_m3

k-mer sig=55.36; evalue=4.4e-56

wwtATTTTAtw

WATAAAATAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9039 (11.71%)
Max nb of predicted sites per peak: 41
(chromosome_GRCh38_15_1_101991189_1:74713871-74714203())
Mean nb of predicted sites per peak: 1.33

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv4_m4

k-mer sig=53.94; evalue=1.1e-54

aaAAATTArm

KYTAATTTTT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 14032 (18.18%)
Max nb of predicted sites per peak: 6
(chromosome_GRCh38_3_1_198295559_1:152016112-152016778())
Mean nb of predicted sites per peak: 1.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv4_m5

k-mer sig=53.71; evalue=1.9e-54

srGGCtGGGCgs

SCGCCCAGCCYS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 12061 (15.62%)
Max nb of predicted sites per peak: 28
(chromosome_GRCh38_1_1_248956422_1:205227765-205228240())
Mean nb of predicted sites per peak: 1.65

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=32.13; evalue=7.4e-33

srGtCACGTGaCys

SRGTCACGTGACYS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2821 (3.65%)
Max nb of predicted sites per peak: 14
(chromosome_GRCh38_2_1_242193529_1:502999-503215())
Mean nb of predicted sites per peak: 2.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=9.54; evalue=2.9e-10

ssGaGGCCaGGCGbg

CVCGCCTGGCCTCSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 12396 (16.06%)
Max nb of predicted sites per peak: 41
(chromosome_GRCh38_22_1_50818468_1:43343118-43343867())
Mean nb of predicted sites per peak: 1.92

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=6.45; evalue=3.5e-07

ssGGGCtGGGCss

SSGCCCAGCCCSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9609 (12.45%)
Max nb of predicted sites per peak: 63
(chromosome_GRCh38_22_1_50818468_1:43343118-43343867())
Mean nb of predicted sites per peak: 2.28

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=5.27; evalue=5.4e-06

ssCGGGGCaGCCCss

SSGGGCTGCCCCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 5874 (7.61%)
Max nb of predicted sites per peak: 126
(chromosome_GRCh38_12_1_133275309_1:124567399-124567692())
Mean nb of predicted sites per peak: 4.10

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

k-mer sig=3.38; evalue=0.00042

wtTTAAAAwaw

WTWTTTTAAAW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10954 (14.19%)
Max nb of predicted sites per peak: 9
(chromosome_GRCh38_3_1_198295559_1:141514645-141515374())
Mean nb of predicted sites per peak: 1.34

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv5_m1

k-mer sig=136.84; evalue=1.4e-137

dtATTTTTAaww

WWTTAAAAATAH

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9773 (12.66%)
Max nb of predicted sites per peak: 8
(chromosome_GRCh38_17_1_83257441_1:60825436-60825662())
Mean nb of predicted sites per peak: 1.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv5_m2

k-mer sig=59.10; evalue=7.9e-60

awACAAAAACwa

TWGTTTTTGTWT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7908 (10.24%)
Max nb of predicted sites per peak: 6
(chromosome_GRCh38_3_1_198295559_1:125732601-125732860())
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv5_m3

k-mer sig=36.61; evalue=2.5e-37

tyTCTTTTTCyy

RRGAAAAAGARA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3245 (4.20%)
Max nb of predicted sites per peak: 6
(chromosome_GRCh38_7_1_159345973_1:56323499-56323702())
Mean nb of predicted sites per peak: 1.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv5_m4

k-mer sig=36.05; evalue=8.9e-37

kwCTGTtTCwy

RWGAAACAGWM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4201 (5.44%)
Max nb of predicted sites per peak: 7
(chromosome_GRCh38_22_1_50818468_1:44299912-44300163())
Mean nb of predicted sites per peak: 1.04

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv5_m5

k-mer sig=34.20; evalue=6.3e-35

cyCTGTCTChm

KDGAGACAGRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10175 (13.18%)
Max nb of predicted sites per peak: 28
(chromosome_GRCh38_6_1_170805979_1:468929-469277())
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

k-mer sig=59.66; evalue=2.2e-60

svgGtCACGTGaCcbs

SVGGTCACGTGACCBS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3933 (5.09%)
Max nb of predicted sites per peak: 14
(chromosome_GRCh38_2_1_242193529_1:502999-503215())
Mean nb of predicted sites per peak: 2.26

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

k-mer sig=59.66; evalue=2.2e-60

sggGtCACGtGgbc

GVCCACGTGACCCS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 5786 (7.49%)
Max nb of predicted sites per peak: 16
(chromosome_GRCh38_16_1_90338345_1:544691-545077())
Mean nb of predicted sites per peak: 1.46

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 positions_7nt_m3

k-mer sig=59.66; evalue=2.2e-60

srGGTCACGtGatcs

SGATCACGTGACCYS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8410 (10.89%)
Max nb of predicted sites per peak: 14
(chromosome_GRCh38_2_1_242193529_1:502999-503215())
Mean nb of predicted sites per peak: 1.40

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 positions_7nt_m4

k-mer sig=6.69; evalue=2e-07

gtGAGCCACcgy

RCGGTGGCTCAC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9932 (12.87%)
Max nb of predicted sites per peak: 7
(chromosome_GRCh38_1_1_248956422_1:1502285-1503547())
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 positions_7nt_m5

k-mer sig=4.26; evalue=5.5e-05

aaAAAAAAAaa

TTTTTTTTTTT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10841 (14.04%)
Max nb of predicted sites per peak: 48
(chromosome_GRCh38_16_1_90338345_1:11443175-11443884())
Mean nb of predicted sites per peak: 5.93

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: MITF_2 (18/12/2025 19:04)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results