peak-motifs MITF

motif discovery

oligos_6nt_mkv4

oligos_6nt_mkv4_m1	assembly: cttttc (sig=10.01; e-value=9.8e-11)	RC: gaaaag
oligos_6nt_mkv4_m2	assembly: aacact (sig=9.89; e-value=1.3e-10)	RC: agtgtt
oligos_6nt_mkv4_m3	assembly: attcca (sig=9.10; e-value=7.9e-10)	RC: tggaat
oligos_6nt_mkv4_m4	assembly: gctgggcagggc (sig=8.31; e-value=4.9e-09)	RC: gccctgcccagc
oligos_6nt_mkv4_m5	assembly: gccaggc (sig=8.30; e-value=5e-09)	RC: gcctggc

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_6nt

positions_6nt_m1	assembly: tacacacatgcacac (sig=37.55; e-value=2.8e-38)	RC: gtgtgcatgtgtgta
positions_6nt_m2	assembly: tcacgtga (sig=6.77; e-value=1.7e-07)	RC: tcacgtga
positions_6nt_m3	assembly: aaataa (sig=0.28; e-value=0.52)	RC: ttattt
positions_6nt_m4	: (sig=; e-value=1)	RC:
positions_6nt_m5	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

oligos_7nt_mkv5

oligos_7nt_mkv5_m1	assembly: attttta (sig=18.45; e-value=3.5e-19)	RC: taaaaat
oligos_7nt_mkv5_m2	assembly: ctgtgtc (sig=11.46; e-value=3.5e-12)	RC: gacacag
oligos_7nt_mkv5_m3	assembly: cacatgcacac (sig=7.79; e-value=1.6e-08)	RC: gtgtgcatgtg
oligos_7nt_mkv5_m4	assembly: aacacaa (sig=7.45; e-value=3.5e-08)	RC: ttgtgtt
oligos_7nt_mkv5_m5	assembly: acaaaaac (sig=6.43; e-value=3.7e-07)	RC: gtttttgt

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_7nt

positions_7nt_m1	assembly: acacacac (sig=23.65; e-value=2.2e-24)	RC: gtgtgtgt
positions_7nt_m2	assembly: atcacgtgat (sig=14.92; e-value=1.2e-15)	RC: atcacgtgat
positions_7nt_m3	assembly: atgtgtgtgc (sig=23.65; e-value=2.2e-24)	RC: gcacacacat
positions_7nt_m4	: (sig=; e-value=1)	RC:
positions_7nt_m5	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

Motif discovery

Motif 1 oligos_6nt_mkv4_m1

k-mer sig=10.01; evalue=9.8e-11

tyCTTTTCyy

RRGAAAAGRA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 966 (11.12%)
Max nb of predicted sites per peak: 13
(chromosome_GRCh38_12_1_133275309_1:124837451-124837661())
Mean nb of predicted sites per peak: 1.13

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv4_m2

k-mer sig=9.89; evalue=1.3e-10

svAACACTsk

MSAGTGTTBS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1088 (12.52%)
Max nb of predicted sites per peak: 9
(chromosome_GRCh38_2_1_242193529_1:92290520-92291736())
Mean nb of predicted sites per peak: 1.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv4_m3

k-mer sig=9.10; evalue=7.9e-10

csATTCCAtt

AATGGAATSG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 636 (7.32%)
Max nb of predicted sites per peak: 94
(chromosome_GRCh38_4_1_190214555_1:49650341-49651297())
Mean nb of predicted sites per peak: 4.81

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv4_m4

k-mer sig=8.31; evalue=4.9e-09

sgGCtGGGCaGGGcss

SSGCCCTGCCCAGCCS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1365 (15.71%)
Max nb of predicted sites per peak: 66
(chromosome_GRCh38_8_1_145138636_1:139703640-139704319())
Mean nb of predicted sites per peak: 2.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv4_m5

k-mer sig=8.30; evalue=5e-09

srGCCAGGCts

SAGCCTGGCYS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1688 (19.42%)
Max nb of predicted sites per peak: 13
(chromosome_GRCh38_1_1_248956422_1:24833563-24833834())
Mean nb of predicted sites per peak: 1.59

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=37.55; evalue=2.8e-38

cacACACACAyrCACACac

GTGTGTGYRTGTGTGTGTG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 709 (8.16%)
Max nb of predicted sites per peak: 290
(chromosome_GRCh38_5_1_181538259_1:1870052-1871293())
Mean nb of predicted sites per peak: 14.56

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=6.77; evalue=1.7e-07

smTCACGTGAks

SMTCACGTGAKS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 839 (9.65%)
Max nb of predicted sites per peak: 10
(chromosome_GRCh38_5_1_181538259_1:14348701-14349106())
Mean nb of predicted sites per peak: 2.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=0.28; evalue=0.52

aaAAATAAaw

WTTTATTTTT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2194 (25.25%)
Max nb of predicted sites per peak: 16
(chromosome_GRCh38_18_1_80373285_1:22351306-22351562())
Mean nb of predicted sites per peak: 1.55

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_mkv5_m1

k-mer sig=18.45; evalue=3.5e-19

dtATTTTTAtw

WATAAAAATAH

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1809 (20.82%)
Max nb of predicted sites per peak: 42
(chromosome_GRCh38_10_1_133797422_1:2357451-2357768())
Mean nb of predicted sites per peak: 1.72

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_mkv5_m2

k-mer sig=11.46; evalue=3.5e-12

stCTGTGTCtc

GAGACACAGAS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 835 (9.61%)
Max nb of predicted sites per peak: 40
(chromosome_GRCh38_6_1_170805979_1:469001-469668())
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv5_m3

k-mer sig=7.79; evalue=1.6e-08

caCACAyrCACACac

GTGTGTGYRTGTGTG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 919 (10.58%)
Max nb of predicted sites per peak: 130
(chromosome_GRCh38_5_1_181538259_1:3727525-3728321())
Mean nb of predicted sites per peak: 7.62

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv5_m4

k-mer sig=7.45; evalue=3.5e-08

wwAACACAAwh

DWTTGTGTTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 485 (5.58%)
Max nb of predicted sites per peak: 4
(chromosome_GRCh38_2_1_242193529_1:23203671-23203889())
Mean nb of predicted sites per peak: 1.06

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv5_m5

k-mer sig=6.43; evalue=3.7e-07

awACAAAAACwa

TWGTTTTTGTWT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1095 (12.60%)
Max nb of predicted sites per peak: 5
(chromosome_GRCh38_7_1_159345973_1:52353453-52353744())
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 positions_7nt_m1

k-mer sig=23.65; evalue=2.2e-24

acACACACACac

GTGTGTGTGTGT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 768 (8.84%)
Max nb of predicted sites per peak: 124
(chromosome_GRCh38_5_1_181538259_1:3727525-3728321())
Mean nb of predicted sites per peak: 7.69

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 positions_7nt_m2

k-mer sig=14.92; evalue=1.2e-15

rgaTCACGTGAtcy

RGATCACGTGATCY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 900 (10.36%)
Max nb of predicted sites per peak: 10
(chromosome_GRCh38_5_1_181538259_1:14348701-14349106())
Mean nb of predicted sites per peak: 2.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m3

k-mer sig=23.65; evalue=2.2e-24

gyrTGTGTGTGygt

ACRCACACACAYRC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 791 (9.10%)
Max nb of predicted sites per peak: 138
(chromosome_GRCh38_5_1_181538259_1:3727525-3728321())
Mean nb of predicted sites per peak: 8.37

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: MITF_3 (18/12/2025 19:06)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results