position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.190736_2025-12-18.190736_aiIxB3/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title HA_CTRL_2 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.190736_2025-12-18.190736_aiIxB3/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.190736_2025-12-18.190736_aiIxB3/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.190736_2025-12-18.190736_aiIxB3/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 823 Sum of sequence lengths 249445 Min sequence length 0 Max sequence length 1000 Average sequence length 303 Possible positions 249445 Oligonucleotide statistics: Total occurrences 195715 Position interval parameters: Position interval 20 Number of windows 50 Total positions 249445 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 10 190 2 -24 [-479,-460] -469.5 11 216 3 -23 [-459,-440] -449.5 13 240 4 -22 [-439,-420] -429.5 15 284 5 -21 [-419,-400] -409.5 17 321 6 -20 [-399,-380] -389.5 20 385 7 -19 [-379,-360] -369.5 26 457 8 -18 [-359,-340] -349.5 29 551 9 -17 [-339,-320] -329.5 35 664 10 -16 [-319,-300] -309.5 44 814 11 -15 [-299,-280] -289.5 54 961 12 -14 [-279,-260] -269.5 65 1192 13 -13 [-259,-240] -249.5 80 1465 14 -12 [-239,-220] -229.5 100 1857 15 -11 [-219,-200] -209.5 126 2261 16 -10 [-199,-180] -189.5 171 2994 17 -9 [-179,-160] -169.5 232 4021 18 -8 [-159,-140] -149.5 384 6172 19 -7 [-139,-120] -129.5 472 8578 20 -6 [-119,-100] -109.5 596 10691 21 -5 [-99,-80] -89.5 823 14970 22 -4 [-79,-60] -69.5 823 16460 23 -3 [-59,-40] -49.5 823 16460 24 -2 [-39,-20] -29.5 823 16460 25 -1 [-19,0] -9.5 823 16460 26 0 [1,20] 10.5 823 16460 27 1 [21,40] 30.5 823 16460 28 2 [41,60] 50.5 823 16460 29 3 [61,80] 70.5 823 16460 30 4 [81,100] 90.5 823 14753 31 5 [101,120] 110.5 591 10573 32 6 [121,140] 130.5 465 8491 33 7 [141,160] 150.5 380 6020 34 8 [161,180] 170.5 228 3952 35 9 [181,200] 190.5 170 2955 36 10 [201,220] 210.5 125 2236 37 11 [221,240] 230.5 100 1838 38 12 [241,260] 250.5 80 1450 39 13 [261,280] 270.5 64 1180 40 14 [281,300] 290.5 53 947 41 15 [301,320] 310.5 44 804 42 16 [321,340] 330.5 35 659 43 17 [341,360] 350.5 29 548 44 18 [361,380] 370.5 26 451 45 19 [381,400] 390.5 20 382 46 20 [401,420] 410.5 16 318 47 21 [421,440] 430.5 15 280 48 22 [441,460] 450.5 13 240 49 23 [461,480] 470.5 11 216 50 24 [481,500] 490.5 10 188 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 40394 | 192.1 | 49 | 7.8e-19 | 3.1e-18 | 17.51 | 1 | 23 | 18 | 36 | 40 | 44 | 57 | 50 | 61 | 84 | 118 | 154 | 190 | 235 | 231 | 324 | 473 | 645 | 953 | 1373 | 1747 | 2470 | 2748 | 2773 | 2653 | 2712 | 2719 | 2603 | 2723 | 2819 | 2493 | 1804 | 1400 | 1012 | 654 | 447 | 324 | 249 | 189 | 147 | 114 | 89 | 69 | 64 | 52 | 47 | 29 | 47 | 32 | 27 | 29 |
| a | a | 57581 | 148.2 | 49 | 6.7e-12 | 2.7e-11 | 10.57 | 2 | 27 | 36 | 40 | 70 | 71 | 74 | 90 | 124 | 149 | 189 | 222 | 246 | 247 | 386 | 483 | 682 | 869 | 1350 | 1987 | 2518 | 3630 | 3895 | 3777 | 3895 | 3975 | 3915 | 3772 | 3779 | 3893 | 3464 | 2478 | 1965 | 1393 | 872 | 636 | 432 | 410 | 300 | 244 | 184 | 162 | 122 | 98 | 89 | 87 | 73 | 53 | 54 | 38 | 36 |
| g | g | 41482 | 96.1 | 49 | 6.7e-05 | 0.00027 | 3.57 | 3 | 17 | 25 | 36 | 44 | 42 | 67 | 67 | 85 | 101 | 117 | 156 | 197 | 214 | 288 | 351 | 492 | 613 | 1042 | 1397 | 1832 | 2602 | 2778 | 2710 | 2813 | 2652 | 2776 | 2808 | 2797 | 2787 | 2555 | 1812 | 1392 | 944 | 643 | 495 | 353 | 289 | 241 | 180 | 136 | 114 | 84 | 68 | 66 | 48 | 45 | 32 | 30 | 28 | 21 |
| t | t | 56258 | 69.8 | 49 | 2.7e-02 | 0.11 | 0.96 | 4 | 43 | 41 | 44 | 66 | 64 | 70 | 114 | 116 | 146 | 187 | 211 | 279 | 330 | 383 | 502 | 615 | 847 | 1417 | 1947 | 2448 | 3463 | 3781 | 3746 | 3698 | 3736 | 3695 | 3822 | 3691 | 3703 | 3455 | 2306 | 1897 | 1364 | 889 | 667 | 534 | 402 | 304 | 227 | 202 | 138 | 117 | 112 | 99 | 84 | 67 | 61 | 45 | 43 | 40 |
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