/var/www/html/rsat/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.190736_2025-12-18.190736_aiIxB3/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.190736_2025-12-18.190736_aiIxB3/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title HA_CTRL_2 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.190736_2025-12-18.190736_aiIxB3/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.190736_2025-12-18.190736_aiIxB3/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.190736_2025-12-18.190736_aiIxB3/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	823
	Sum of sequence lengths      	249445
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	303
	Possible positions           	248622
 Oligonucleotide statistics:
	Total occurrences    	194620
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	248622
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	10	190
	2	-24	[-479,-460]	-469.5	11	216
	3	-23	[-459,-440]	-449.5	13	240
	4	-22	[-439,-420]	-429.5	15	284
	5	-21	[-419,-400]	-409.5	17	321
	6	-20	[-399,-380]	-389.5	20	385
	7	-19	[-379,-360]	-369.5	26	457
	8	-18	[-359,-340]	-349.5	29	551
	9	-17	[-339,-320]	-329.5	35	664
	10	-16	[-319,-300]	-309.5	44	814
	11	-15	[-299,-280]	-289.5	54	961
	12	-14	[-279,-260]	-269.5	65	1192
	13	-13	[-259,-240]	-249.5	80	1465
	14	-12	[-239,-220]	-229.5	100	1857
	15	-11	[-219,-200]	-209.5	126	2261
	16	-10	[-199,-180]	-189.5	171	2994
	17	-9	[-179,-160]	-169.5	232	4021
	18	-8	[-159,-140]	-149.5	384	6172
	19	-7	[-139,-120]	-129.5	472	8578
	20	-6	[-119,-100]	-109.5	596	10691
	21	-5	[-99,-80]	-89.5	823	14970
	22	-4	[-79,-60]	-69.5	823	16460
	23	-3	[-59,-40]	-49.5	823	16460
	24	-2	[-39,-20]	-29.5	823	16460
	25	-1	[-19,0]	-9.5	823	16460
	26	0	[1,20]	10.5	823	16460
	27	1	[21,40]	30.5	823	16460
	28	2	[41,60]	50.5	823	16460
	29	3	[61,80]	70.5	823	16460
	30	4	[81,100]	90.5	823	14521
	31	5	[101,120]	110.5	586	10447
	32	6	[121,140]	130.5	461	8406
	33	7	[141,160]	150.5	378	5868
	34	8	[161,180]	170.5	227	3894
	35	9	[181,200]	190.5	169	2910
	36	10	[201,220]	210.5	124	2211
	37	11	[221,240]	230.5	100	1818
	38	12	[241,260]	250.5	80	1434
	39	13	[261,280]	270.5	64	1169
	40	14	[281,300]	290.5	52	938
	41	15	[301,320]	310.5	43	795
	42	16	[321,340]	330.5	35	653
	43	17	[341,360]	350.5	29	545
	44	18	[361,380]	370.5	26	445
	45	19	[381,400]	390.5	20	378
	46	20	[401,420]	410.5	16	317
	47	21	[421,440]	430.5	15	278
	48	22	[441,460]	450.5	13	238
	49	23	[461,480]	470.5	11	215
	50	24	[481,500]	490.5	10	178

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
cc cc 10085 134.5 49 6.8e-10 1.1e-08 7.96 1 6 3 10 9 13 17 9 9 19 29 35 42 64 48 75 111 170 246 359 439 581 694 691 626 696 689 644 714 748 632 464 349 266 167 102 77 46 39 30 25 16 18 12 10 7 4 7 8 5 5
aa aa 18753 109.0 49 1.9e-06 3e-05 4.52 2 10 13 11 21 20 14 23 51 48 58 77 68 63 129 161 240 313 418 667 818 1170 1258 1209 1260 1367 1275 1191 1265 1298 1106 778 656 468 267 196 121 137 90 87 61 57 41 34 30 30 23 15 21 10 9
ac ac 10072 87.1 49 6.5e-04 0.01 1.98 3 5 6 5 9 11 13 10 16 24 32 36 45 53 66 76 118 148 213 351 448 686 700 694 693 720 656 668 679 654 603 451 340 232 159 102 66 73 42 32 25 22 15 21 9 11 7 9 7 5 6
ca ca 14501 80.7 49 2.9e-03 0.047 1.33 4 6 7 9 16 17 20 25 20 38 47 58 69 69 83 116 175 229 343 517 613 944 1004 1000 971 980 1019 932 940 999 863 631 481 323 228 166 100 95 65 58 39 35 27 23 15 23 13 22 9 9 10
ag ag 13600 72.7 49 1.6e-02 0.25 0.60 5 3 4 11 13 15 19 17 24 30 39 41 60 66 92 112 161 194 334 439 594 872 915 855 946 889 965 903 883 927 822 635 473 302 220 151 114 93 85 62 41 43 37 17 21 15 14 9 8 9 6
tt tt 17949 70.2 49 2.5e-02 0.4 0.40 6 19 14 10 16 12 15 39 36 43 65 66 105 124 122 170 193 268 479 640 788 1147 1192 1146 1166 1201 1201 1226 1171 1125 1098 717 595 419 294 210 192 127 103 71 73 47 41 35 27 30 20 16 13 11 11
ct ct 13303 69.4 49 2.9e-02 0.47 0.33 7 10 7 15 14 11 16 14 27 22 34 51 63 93 86 119 152 208 305 421 587 788 890 921 907 886 854 883 912 910 833 584 476 324 203 136 124 88 69 52 42 24 20 28 22 13 10 17 11 12 9
gc gc 8277 68.1 49 3.7e-02 0.59 0.23 8 2 4 12 7 3 16 9 9 20 22 36 45 45 47 69 108 135 206 277 380 502 569 543 559 542 572 561 556 573 487 382 278 177 125 84 73 45 42 28 28 19 13 12 13 15 3 11 8 2 3
at at 14849 66.2 49 5.1e-02 0.82 0.09 9 9 13 13 27 25 28 39 32 47 60 67 73 63 97 133 162 212 382 526 654 894 1013 1011 987 990 1017 1000 943 1008 877 576 473 361 214 172 125 99 78 58 53 37 29 25 28 30 28 18 16 14 13
ga ga 12156 55.1 49 2.5e-01 4.1 -0.61 10 3 7 11 16 18 17 22 33 23 35 51 56 60 94 106 139 163 290 388 570 761 807 797 839 789 845 813 808 804 732 538 431 268 178 125 96 85 77 52 36 38 28 18 17 12 19 7 14 11 9
tc tc 11697 53.3 49 3.1e-01 5 -0.70 11 9 6 8 15 19 13 19 22 26 31 49 55 63 72 105 129 186 287 359 481 689 799 838 752 773 770 752 751 828 738 482 419 300 190 145 106 86 60 52 40 28 21 23 17 15 16 17 11 11 14
gg gg 10978 50.5 49 4.1e-01 6.6 -0.82 12 7 7 8 11 10 19 17 20 25 32 40 56 53 72 96 136 167 287 376 468 702 710 716 762 692 714 745 756 753 688 481 352 242 160 141 93 85 66 56 36 26 19 15 14 11 12 8 4 7 5
tg tg 14447 46.1 49 5.9e-01 9.5 -0.98 13 8 10 16 19 15 19 32 37 40 43 63 67 88 111 129 158 228 347 518 642 917 976 981 954 911 946 1026 994 955 867 592 461 303 215 162 128 96 75 54 44 32 29 31 25 20 15 16 14 12 6
gt gt 9845 45.1 49 6.3e-01 10 -1.01 14 5 7 5 9 11 15 19 23 32 27 29 38 54 75 79 106 146 253 350 413 634 689 647 646 622 641 687 673 655 594 387 313 234 170 137 84 70 52 43 33 29 24 21 22 10 10 6 4 8 4
ta ta 11864 43.8 49 6.8e-01 11 -1.04 15 7 11 10 15 18 21 24 21 37 48 33 52 54 78 97 131 163 301 424 525 704 811 779 821 842 769 812 766 788 697 484 401 290 177 141 104 88 62 47 44 29 22 23 27 16 16 12 7 8 7
cg cg 2244 21.6 49 1.0e+00 16 -1.20 16 1 1 2 0 3 4 2 4 5 6 10 12 8 14 12 33 37 56 75 102 145 152 158 144 148 145 141 154 160 119 91 78 63 40 31 15 16 11 7 8 10 3 1 5 4 1 1 3 1 2 
 Host name	rsat
 Job started	2025-12-18.190741
 Job done	2025-12-18.190742
 Seconds	1.49
	user	1.49
	system	0
	cuser	0
;	csystem	0