peak-motifs MITF

motif discovery

oligos_6nt_mkv4

oligos_6nt_mkv4_m1	assembly: attcca (sig=7.99; e-value=1e-08)	RC: tggaat
oligos_6nt_mkv4_m2	assembly: cttttc (sig=5.91; e-value=1.2e-06)	RC: gaaaag
oligos_6nt_mkv4_m3	assembly: ctgggc (sig=5.05; e-value=8.9e-06)	RC: gcccag
oligos_6nt_mkv4_m4	assembly: gccaggc (sig=4.53; e-value=3e-05)	RC: gcctggc
oligos_6nt_mkv4_m5	assembly: aaatta (sig=3.88; e-value=0.00013)	RC: taattt

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_6nt

positions_6nt_m1	assembly: acacaca (sig=7.08; e-value=8.3e-08)	RC: tgtgtgt
positions_6nt_m2	assembly: acatgca (sig=5.48; e-value=3.3e-06)	RC: tgcatgt
positions_6nt_m3	: (sig=; e-value=1)	RC:
positions_6nt_m4	: (sig=; e-value=1)	RC:
positions_6nt_m5	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

oligos_7nt_mkv5

oligos_7nt_mkv5_m1	assembly: attttta (sig=10.01; e-value=9.8e-11)	RC: taaaaat
oligos_7nt_mkv5_m2	assembly: aatgcaa (sig=4.07; e-value=8.5e-05)	RC: ttgcatt
oligos_7nt_mkv5_m3	assembly: catgcaca (sig=3.87; e-value=0.00013)	RC: tgtgcatg
oligos_7nt_mkv5_m4	assembly: catacac (sig=3.70; e-value=0.0002)	RC: gtgtatg
oligos_7nt_mkv5_m5	assembly: ctgtgtc (sig=3.40; e-value=0.0004)	RC: gacacag

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_7nt

positions_7nt_m1	assembly: catgtgtgtg (sig=2.27; e-value=0.0054)	RC: cacacacatg
positions_7nt_m2	assembly: tcacgtga (sig=0.64; e-value=0.23)	RC: tcacgtga
positions_7nt_m3	: (sig=; e-value=1)	RC:
positions_7nt_m4	: (sig=; e-value=1)	RC:
positions_7nt_m5	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

Motif discovery

Motif 1 oligos_6nt_mkv4_m1

k-mer sig=7.99; evalue=1e-08

csATTCCAtt

AATGGAATSG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 344 (7.67%)
Max nb of predicted sites per peak: 72
(chromosome_GRCh38_4_1_190214555_1:49110191-49110875())
Mean nb of predicted sites per peak: 6.70

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv4_m2

k-mer sig=5.91; evalue=1.2e-06

tyCTTTTCyy

RRGAAAAGRA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 469 (10.46%)
Max nb of predicted sites per peak: 13
(chromosome_GRCh38_12_1_133275309_1:124837384-124837659())
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv4_m3

k-mer sig=5.05; evalue=8.9e-06

ssCTGGGCss

SSGCCCAGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 897 (20.01%)
Max nb of predicted sites per peak: 17
(chromosome_GRCh38_20_1_64444167_1:62066181-62066501())
Mean nb of predicted sites per peak: 1.59

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv4_m4

k-mer sig=4.53; evalue=3e-05

sgGCCaGGCts

SAGCCTGGCCS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 882 (19.67%)
Max nb of predicted sites per peak: 15
(chromosome_GRCh38_12_1_133275309_1:119918509-119918888())
Mean nb of predicted sites per peak: 1.67

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv4_m5

k-mer sig=3.88; evalue=0.00013

aaAAATTAgm

KCTAATTTTT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 945 (21.08%)
Max nb of predicted sites per peak: 5
(chromosome_GRCh38_11_1_135086622_1:4735586-4735877())
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=7.08; evalue=8.3e-08

acACACACAya

TRTGTGTGTGT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 453 (10.10%)
Max nb of predicted sites per peak: 87
(chromosome_GRCh38_11_1_135086622_1:356577-357139())
Mean nb of predicted sites per peak: 5.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=5.48; evalue=3.3e-06

ayACATGCAyr

YRTGCATGTRT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 422 (9.41%)
Max nb of predicted sites per peak: 43
(chromosome_GRCh38_6_1_170805979_1:26670303-26671250())
Mean nb of predicted sites per peak: 2.29

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_mkv5_m1

k-mer sig=10.01; evalue=9.8e-11

dtATTTTTAtw

WATAAAAATAH

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 940 (20.97%)
Max nb of predicted sites per peak: 50
(chromosome_GRCh38_2_1_242193529_1:2856519-2856938())
Mean nb of predicted sites per peak: 1.93

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_mkv5_m2

k-mer sig=4.07; evalue=8.5e-05

vkAATGCAAwc

GWTTGCATTMB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 308 (6.87%)
Max nb of predicted sites per peak: 19
(chromosome_GRCh38_16_1_90338345_1:46385957-46386836())
Mean nb of predicted sites per peak: 1.93

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_mkv5_m3

k-mer sig=3.87; evalue=0.00013

crCATGCACasr

YSTGTGCATGYG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 413 (9.21%)
Max nb of predicted sites per peak: 35
(chromosome_GRCh38_5_1_181538259_1:6830692-6831291())
Mean nb of predicted sites per peak: 2.41

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv5_m4

k-mer sig=3.70; evalue=0.0002

caCAyACACac

GTGTGTRTGTG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 451 (10.06%)
Max nb of predicted sites per peak: 74
(chromosome_GRCh38_11_1_135086622_1:356577-357139())
Mean nb of predicted sites per peak: 4.45

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv5_m5

k-mer sig=3.40; evalue=0.0004

stCTGTGTCtc

GAGACACAGAS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 407 (9.08%)
Max nb of predicted sites per peak: 40
(chromosome_GRCh38_6_1_170805979_1:468963-469697())
Mean nb of predicted sites per peak: 1.30

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 positions_7nt_m1

k-mer sig=2.27; evalue=0.0054

tgyrTGTGTGTGyg

CRCACACACAYRCA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 457 (10.19%)
Max nb of predicted sites per peak: 87
(chromosome_GRCh38_11_1_135086622_1:356577-357139())
Mean nb of predicted sites per peak: 5.82

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 positions_7nt_m2

k-mer sig=0.64; evalue=0.23

smTCACGTGAks

SMTCACGTGAKS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 397 (8.86%)
Max nb of predicted sites per peak: 10
(chromosome_GRCh38_5_1_181538259_1:14348936-14349384())
Mean nb of predicted sites per peak: 2.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: MITF_K243Q (18/12/2025 19:10)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results