RSAT - peak-motifs result

Analysis: MITF_K243R (18/12/2025 19:19)

peak-motifs  -v 1 -title MITF_K243R -i $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.190911_2025-12-18.190911_rQVAjX/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.190911_2025-12-18.190911_rQVAjX

motif discovery
oligos_6nt_mkv4	oligos_6nt_mkv4_m1 assembly: gctgggcagggc (sig=53.02; e-value=9.5e-54) RC: gccctgcccagc oligos_6nt_mkv4_m2 assembly: cgcccg (sig=48.63; e-value=2.3e-49) RC: cgggcg oligos_6nt_mkv4_m3 assembly: cttttc (sig=47.23; e-value=5.9e-48) RC: gaaaag oligos_6nt_mkv4_m4 assembly: gccaggc (sig=38.16; e-value=6.9e-39) RC: gcctggc oligos_6nt_mkv4_m5 assembly: cttctc (sig=37.49; e-value=3.2e-38) RC: gagaag	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv5	oligos_7nt_mkv5_m1 assembly: atttttaa (sig=74.31; e-value=4.9e-75) RC: ttaaaaat oligos_7nt_mkv5_m2 assembly: cgcctgc (sig=31.84; e-value=1.4e-32) RC: gcaggcg oligos_7nt_mkv5_m3 assembly: caaaaac (sig=29.57; e-value=2.7e-30) RC: gtttttg oligos_7nt_mkv5_m4 assembly: ccacacc (sig=29.42; e-value=3.8e-30) RC: ggtgtgg oligos_7nt_mkv5_m5 assembly: tctttttc (sig=28.62; e-value=2.4e-29) RC: gaaaaaga	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv4_m1	k-mer sig=53.02; evalue=9.5e-54 ssGCtGGGCaGGGCss SSGCCCTGCCCAGCSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 6327 (16.06%) Max nb of predicted sites per peak: 53  (chromosome_GRCh38_1_1_248956422_1:1231827-1232522()) Mean nb of predicted sites per peak: 2.28	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv4_m2	k-mer sig=48.63; evalue=2.3e-49 ssCGCCCGss SSCGGGCGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4041 (10.26%) Max nb of predicted sites per peak: 38  (chromosome_GRCh38_22_1_50818468_1:19714103-19715160()) Mean nb of predicted sites per peak: 2.41	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv4_m3	k-mer sig=47.23; evalue=5.9e-48 ttCTTTTCyt ARGAAAAGAA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4077 (10.35%) Max nb of predicted sites per peak: 9  (chromosome_GRCh38_7_1_159345973_1:100730727-100731233()) Mean nb of predicted sites per peak: 1.14	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv4_m4	k-mer sig=38.16; evalue=6.9e-39 sgGCCAGGCys SRGCCTGGCCS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 6025 (15.30%) Max nb of predicted sites per peak: 16  (chromosome_GRCh38_17_1_83257441_1:171014-171583()) Mean nb of predicted sites per peak: 1.55	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv4_m5	k-mer sig=37.49; evalue=3.2e-38 csCTTCTCyg CRGAGAAGSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 3571 (9.07%) Max nb of predicted sites per peak: 11  (chromosome_GRCh38_5_1_181538259_1:149111254-149111781()) Mean nb of predicted sites per peak: 1.09	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv5_m1	k-mer sig=74.31; evalue=4.9e-75 wtATTTTTAaww WWTTAAAAATAW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 6961 (17.67%) Max nb of predicted sites per peak: 29  (chromosome_GRCh38_7_1_159345973_1:1135716-1136148()) Mean nb of predicted sites per peak: 1.32	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv5_m2	k-mer sig=31.84; evalue=1.4e-32 ssCGCCTGCss SSGCAGGCGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5202 (13.21%) Max nb of predicted sites per peak: 32  (chromosome_GRCh38_17_1_83257441_1:80260536-80260771()) Mean nb of predicted sites per peak: 1.80	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv5_m3	k-mer sig=29.57; evalue=2.7e-30 waCAAAAACwm KWGTTTTTGTW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 3531 (8.96%) Max nb of predicted sites per peak: 4  (chromosome_GRCh38_6_1_170805979_1:25732773-25732945()) Mean nb of predicted sites per peak: 1.10	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv5_m4	k-mer sig=29.42; evalue=3.8e-30 smCCACACCys SRGGTGTGGKS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4393 (11.15%) Max nb of predicted sites per peak: 16  (chromosome_GRCh38_5_1_181538259_1:500440-501082()) Mean nb of predicted sites per peak: 1.15	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv5_m5	k-mer sig=28.62; evalue=2.4e-29 ttTCTTTTTCtt AAGAAAAAGAAA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4444 (11.28%) Max nb of predicted sites per peak: 12  (chromosome_GRCh38_2_1_242193529_1:228189843-228190076()) Mean nb of predicted sites per peak: 1.32	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title MITF_K243R -i $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.190911_2025-12-18.190911_rQVAjX/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.190911_2025-12-18.190911_rQVAjX

Warning: Not a single pattern was found in file tmp/www-data/2025/12/18/peak-motifs.2025-12-18.190911_2025-12-18.190911_rQVAjX/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/12/18/peak-motifs.2025-12-18.190911_2025-12-18.190911_rQVAjX/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab