RSAT - peak-motifs result

Analysis: HA_CTRL_1 (18/12/2025 19:23)

peak-motifs  -v 1 -title HA_CTRL_1 -i $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.192302_2025-12-18.192302_HeMbBV/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.192302_2025-12-18.192302_HeMbBV

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: gcctcccagcct (sig=11.29; e-value=5.1e-12) RC: aggctgggaggc oligos_6nt_mkv2_m2 assembly: aaaataaa (sig=4.72; e-value=1.9e-05) RC: tttatttt oligos_6nt_mkv2_m3 assembly: aggctgga (sig=8.69; e-value=2e-09) RC: tccagcct oligos_6nt_mkv2_m4 assembly: aggcag (sig=2.26; e-value=0.0055) RC: ctgcct oligos_6nt_mkv2_m5 assembly: cccaccc (sig=2.14; e-value=0.0072) RC: gggtggg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: ctccagcctccca (sig=10.04; e-value=9.1e-11) RC: tgggaggctggag oligos_7nt_mkv2_m2 assembly: ctccagcctggg (sig=8.13; e-value=7.4e-09) RC: cccaggctggag oligos_7nt_mkv2_m3 assembly: agtagctgggatt (sig=5.22; e-value=6e-06) RC: aatcccagctact oligos_7nt_mkv2_m4 assembly: ggattac (sig=2.97; e-value=0.0011) RC: gtaatcc oligos_7nt_mkv2_m5 assembly: ccacccc (sig=2.81; e-value=0.0015) RC: ggggtgg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=11.29; evalue=5.1e-12 CsGCCtCCCaGsCTsr YSAGSCTGGGAGGCSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 69 (5.35%) Max nb of predicted sites per peak: 14  (chromosome_GRCh38_15_1_101991189_1:89868283-89868497()) Mean nb of predicted sites per peak: 1.39	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=4.72; evalue=1.9e-05 wwAAAATAAAaw WTTTTATTTTWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 54 (4.19%) Max nb of predicted sites per peak: 7  (chromosome_GRCh38_19_1_58617616_1:28573947-28573994()) Mean nb of predicted sites per peak: 1.30	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=8.69; evalue=2e-09 ssAGGCTGGagk MCTCCAGCCTSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 68 (5.27%) Max nb of predicted sites per peak: 2  (chromosome_GRCh38_8_1_145138636_1:43093778-43093865()) Mean nb of predicted sites per peak: 1.10	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=2.26; evalue=0.0055 ssAGGCaGvr YBCTGCCTSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 75 (5.81%) Max nb of predicted sites per peak: 2  (chromosome_GRCh38_9_1_138394717_1:87879609-87879738()) Mean nb of predicted sites per peak: 1.19	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=2.14; evalue=0.0072 syCCCaCCCms SKGGGTGGGRS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 36 (2.79%) Max nb of predicted sites per peak: 4  (chromosome_GRCh38_15_1_101991189_1:89868283-89868497()) Mean nb of predicted sites per peak: 1.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=10.04; evalue=9.1e-11 ygCyyCaGCCTCCCars SYTGGGAGGCTGRRGCR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 79 (6.12%) Max nb of predicted sites per peak: 3  (chromosome_GRCh38_15_1_101991189_1:89868283-89868497()) Mean nb of predicted sites per peak: 1.11	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=8.13; evalue=7.4e-09 srCtCCAGCCTGGgcv BGCCCAGGCTGGAGYS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 68 (5.27%) Max nb of predicted sites per peak: 5  (chromosome_GRCh38_19_1_58617616_1:41331406-41331657()) Mean nb of predicted sites per peak: 1.24	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=5.22; evalue=6e-06 svaGtaGCTGGGAytrc GYARTCCCAGCTACTBS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 50 (3.88%) Max nb of predicted sites per peak: 2  (chromosome_GRCh38_8_1_145138636_1:22253901-22254059()) Mean nb of predicted sites per peak: 1.04	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=2.97; evalue=0.0011 krGGAtTACag CTGTAATCCYM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 41 (3.18%) Max nb of predicted sites per peak: 2  (chromosome_GRCh38_9_1_138394717_1:87879866-87880176()) Mean nb of predicted sites per peak: 1.02	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=2.81; evalue=0.0015 csCCACCCCcc GGGGGGTGGSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 49 (3.80%) Max nb of predicted sites per peak: 5  (chromosome_GRCh38_19_1_58617616_1:51002718-51002984()) Mean nb of predicted sites per peak: 1.35	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title HA_CTRL_1 -i $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.192302_2025-12-18.192302_HeMbBV/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.192302_2025-12-18.192302_HeMbBV

Warning: Not a single pattern was found in file tmp/www-data/2025/12/18/peak-motifs.2025-12-18.192302_2025-12-18.192302_HeMbBV/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/12/18/peak-motifs.2025-12-18.192302_2025-12-18.192302_HeMbBV/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab