peak-motifs Peaks_ZBTB24_top_10%_(sans_contrôle

Sequence composition (test sequences)

Nb of peaks: 1660
Total seq. size: 1071 kb
Min length: 146 bp
Mean length: 645.366 bp
Max length: 7501 bp [ view peaks in genome browser : ]
[ coordinates: UCSC BED track ]
[ seq: converted purged ]
[ lengths: list distrib graph ]

Nucleotide composition profiles

Transition frequencies
Position profiles

[ 1nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Dinucleotide composition profiles

Transition frequencies
Position profiles

[ 2nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Motif discovery

Motif 1 oligos_6nt_mkv4_m1

k-mer sig=21.43; evalue=3.7e-22

kcCAGGACCTggs

SCCAGGTCCTGGM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 713 (42.95%)
Max nb of predicted sites per peak: 58
(chr4:189423933-189431434)
Mean nb of predicted sites per peak: 1.83

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv4_m2

k-mer sig=7.24; evalue=5.8e-08

csCTCCTCcs

SGGAGGAGSG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 385 (23.19%)
Max nb of predicted sites per peak: 18
(chr11:93124582-93126293)
Mean nb of predicted sites per peak: 1.52

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv4_m3

k-mer sig=4.78; evalue=1.7e-05

ssCGCCCCGCcss

SSGGCGGGGCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 378 (22.77%)
Max nb of predicted sites per peak: 87
(chr17:63556337-63558493)
Mean nb of predicted sites per peak: 6.10

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv4_m4

k-mer sig=4.64; evalue=2.3e-05

ssCGCCCGss

SSCGGGCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 342 (20.60%)
Max nb of predicted sites per peak: 36
(chr17:63556337-63558493)
Mean nb of predicted sites per peak: 3.74

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv4_m5

k-mer sig=4.08; evalue=8.3e-05

ssCGGGACss

SSGTCCCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 327 (19.70%)
Max nb of predicted sites per peak: 42
(chrY:134912-137348)
Mean nb of predicted sites per peak: 2.51

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_7nt_mkv5_m1

k-mer sig=9.04; evalue=9.1e-10

wwATTTTTAww

WWTAAAAATWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 440 (26.51%)
Max nb of predicted sites per peak: 10
(chr1:236252663-236253942)
Mean nb of predicted sites per peak: 1.56

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_mkv5_m2

k-mer sig=7.62; evalue=2.4e-08

tkCCAGGACCTGss

SSCAGGTCCTGGMA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 725 (43.67%)
Max nb of predicted sites per peak: 65
(chr4:189423933-189431434)
Mean nb of predicted sites per peak: 1.81

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_mkv5_m3

k-mer sig=4.60; evalue=2.5e-05

wdCAAGGACmy

RKGTCCTTGHW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 280 (16.87%)
Max nb of predicted sites per peak: 4
(chr4:189423933-189431434)
Mean nb of predicted sites per peak: 1.10

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_mkv5_m4

k-mer sig=4.18; evalue=6.6e-05

twCTTTTTCwy

RWGAAAAAGWA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 285 (17.17%)
Max nb of predicted sites per peak: 5
(chr2:92312007-92313597)
Mean nb of predicted sites per peak: 1.19

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_mkv5_m5

k-mer sig=4.08; evalue=8.3e-05

tcCTGGAAGrr

YYCTTCCAGGA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 459 (27.65%)
Max nb of predicted sites per peak: 62
(chr4:189423933-189431434)
Mean nb of predicted sites per peak: 1.37

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Predicted sites on test peaks (all motifs)

[tab]
[bed]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

Thomas-Chollier M, Herrmann C, Defrance M, Sand O, Thieffry D, van Helden J. (2012). RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets. Nucleic Acids Res 40(4): e31.
Thomas-Chollier M, Darbo E, Herrmann C, Defrance M, Thieffry D, van Helden J. (2012). A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs. Nat Protoc 7(8): 1551-1568.

RSAT - peak-motifs result

Analysis: Peaks_ZBTB24_top_10%_(sans_contrôle_Empty) (18/12/2025 20:42)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results