peak-motifs RUNX1

motif discovery

oligos_6nt_mkv4

oligos_6nt_mkv4_m1	assembly: cgcccg (sig=226.51; e-value=3.1e-227)	RC: cgggcg
oligos_6nt_mkv4_m2	assembly: cggccg (sig=178.98; e-value=1e-179)	RC: cggccg
oligos_6nt_mkv4_m3	assembly: cgagcg (sig=172.50; e-value=3.2e-173)	RC: cgctcg
oligos_6nt_mkv4_m4	assembly: cttttc (sig=161.90; e-value=1.3e-162)	RC: gaaaag
oligos_6nt_mkv4_m5	assembly: cggagc (sig=143.65; e-value=2.2e-144)	RC: gctccg

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_6nt

positions_6nt_m1	assembly: gagccgctcggg (sig=300; e-value=1e-300)	RC: cccgagcggctc
positions_6nt_m2	assembly: cgcagcgcggcgggcgcctc (sig=300; e-value=1e-300)	RC: gaggcgcccgccgcgctgcg
positions_6nt_m3	assembly: agggcgcccccgccggcct (sig=300; e-value=1e-300)	RC: aggccggcgggggcgccct
positions_6nt_m4	assembly: gagccgctccgccag (sig=300; e-value=1e-300)	RC: ctggcggagcggctc
positions_6nt_m5	assembly: tccccgggacgcg (sig=300; e-value=1e-300)	RC: cgcgtcccgggga

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

oligos_7nt_mkv5

oligos_7nt_mkv5_m1	assembly: attttta (sig=164.08; e-value=8.3e-165)	RC: taaaaat
oligos_7nt_mkv5_m2	assembly: cgccccc (sig=125.26; e-value=5.5e-126)	RC: gggggcg
oligos_7nt_mkv5_m3	assembly: cgccctc (sig=107.85; e-value=1.4e-108)	RC: gagggcg
oligos_7nt_mkv5_m4	assembly: cggcagc (sig=92.73; e-value=1.9e-93)	RC: gctgccg
oligos_7nt_mkv5_m5	assembly: ccccgccc (sig=91.56; e-value=2.8e-92)	RC: gggcgggg

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_7nt

positions_7nt_m1	assembly: cctcccgccgcgcccgggag (sig=300; e-value=1e-300)	RC: ctcccgggcgcggcgggagg
positions_7nt_m2	assembly: ggaggcggggccgcctcc (sig=300; e-value=1e-300)	RC: ggaggcggccccgcctcc
positions_7nt_m3	assembly: gctccgccctc (sig=300; e-value=1e-300)	RC: gagggcggagc
positions_7nt_m4	assembly: ctccgcccccgccgcgcccg (sig=300; e-value=1e-300)	RC: cgggcgcggcgggggcggag
positions_7nt_m5	assembly: gcagccgcggggag (sig=300; e-value=1e-300)	RC: ctccccgcggctgc

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

Motif discovery

Motif 1 oligos_6nt_mkv4_m1

k-mer sig=226.51; evalue=3.1e-227

ssCGCCCGss

SSCGGGCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 23056 (16.61%)
Max nb of predicted sites per peak: 28
(chr19:47363154-47364158)
Mean nb of predicted sites per peak: 2.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv4_m2

k-mer sig=178.98; evalue=1e-179

ssCGGCCGss

SSCGGCCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 17351 (12.50%)
Max nb of predicted sites per peak: 38
(chr2:90449583-90450431)
Mean nb of predicted sites per peak: 3.43

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv4_m3

k-mer sig=172.50; evalue=3.2e-173

ssCGrGCGcg

CGCGCYCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 22639 (16.31%)
Max nb of predicted sites per peak: 28
(chr19:47363154-47364158)
Mean nb of predicted sites per peak: 2.13

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv4_m4

k-mer sig=161.90; evalue=1.3e-162

ttCTTTTCyt

ARGAAAAGAA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 12603 (9.08%)
Max nb of predicted sites per peak: 21
(chr12:114808039-114808221)
Mean nb of predicted sites per peak: 1.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv4_m5

k-mer sig=143.65; evalue=2.2e-144

sgCGGAGCss

SSGCTCCGCS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 13876 (10.00%)
Max nb of predicted sites per peak: 17
(chr10:38691716-38692200)
Mean nb of predicted sites per peak: 1.52

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=300; evalue=1e-300

ssGaGCCGCtCGGGss

SSCCCGAGCGGCTCSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 12933 (9.32%)
Max nb of predicted sites per peak: 35
(chr15:99191776-99192682)
Mean nb of predicted sites per peak: 2.41

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=300; evalue=1e-300

cgsGCrkvGyGGCGGGCGCCTsta

TASAGGCGCCCGCCRCBMYGCSCG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 31309 (22.56%)
Max nb of predicted sites per peak: 33
(chr2:110517787-110518138)
Mean nb of predicted sites per peak: 1.40

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=300; evalue=1e-300

ssaGggCGCCccCGCCGgCCtss

SSAGGCCGGCGGGGGCGCCCTSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 14446 (10.41%)
Max nb of predicted sites per peak: 106
(chr15:99191776-99192682)
Mean nb of predicted sites per peak: 5.44

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=300; evalue=1e-300

rkGAGCCrCysCGCCmGgc

GCCKGGCGSRGYGGCTCMY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 31022 (22.35%)
Max nb of predicted sites per peak: 31
(chr2:48783469-48784761)
Mean nb of predicted sites per peak: 1.56

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

k-mer sig=300; evalue=1e-300

tgwmCCCGGGAsGCGga

TCCGCSTCCCGGGKWCA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 24236 (17.46%)
Max nb of predicted sites per peak: 16
(chr1:911981-912530)
Mean nb of predicted sites per peak: 1.42

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv5_m1

k-mer sig=164.08; evalue=8.3e-165

twATTTTTAdw

WHTAAAAATWA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 42232 (30.43%)
Max nb of predicted sites per peak: 36
(chr12:23990367-23990633)
Mean nb of predicted sites per peak: 1.77

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv5_m2

k-mer sig=125.26; evalue=5.5e-126

ssCGCCCCCss

SSGGGGGCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 25244 (18.19%)
Max nb of predicted sites per peak: 30
(chr9:129375592-129376542)
Mean nb of predicted sites per peak: 2.27

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv5_m3

k-mer sig=107.85; evalue=1.4e-108

sbCGCCCTCcc

GGGAGGGCGVS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 24717 (17.81%)
Max nb of predicted sites per peak: 37
(chr15:100467134-100467705)
Mean nb of predicted sites per peak: 1.61

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv5_m4

k-mer sig=92.73; evalue=1.9e-93

ssCGGCAGCss

SSGCTGCCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10394 (7.49%)
Max nb of predicted sites per peak: 32
(chr16:12009292-12010309)
Mean nb of predicted sites per peak: 2.13

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv5_m5

k-mer sig=91.56; evalue=2.8e-92

csCCCCGCCCss

SSGGGCGGGGSG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 22866 (16.48%)
Max nb of predicted sites per peak: 37
(chr1:15850658-15851894)
Mean nb of predicted sites per peak: 2.01

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

k-mer sig=300; evalue=1e-300

sgCChsCCrCCsCGyCCGGswrrk

MYYWSCCGGRCGSGGYGGSDGGCS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 24140 (17.39%)
Max nb of predicted sites per peak: 36
(chr9:129375592-129376542)
Mean nb of predicted sites per peak: 1.93

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

k-mer sig=300; evalue=1e-300

ssGGmGGCGgsGCCGCCkCCss

SSGGMGGCGGCSCCGCCKCCSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 15623 (11.26%)
Max nb of predicted sites per peak: 95
(chr9:129375592-129376542)
Mean nb of predicted sites per peak: 4.58

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 positions_7nt_m3

k-mer sig=300; evalue=1e-300

vwGCTCCGCCCtCcb

VGGAGGGCGGAGCWB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 26438 (19.05%)
Max nb of predicted sites per peak: 16
(chr15:99191776-99192682)
Mean nb of predicted sites per peak: 1.39

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 positions_7nt_m4

k-mer sig=300; evalue=1e-300

ssckCcgCCsCCgCCGCscCCgss

SSCGGGSGCGGCGGSGGCGGMGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 22408 (16.15%)
Max nb of predicted sites per peak: 334
(chr2:33141222-33141733)
Mean nb of predicted sites per peak: 5.01

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 positions_7nt_m5

k-mer sig=300; evalue=1e-300

ssGcaGCCGCGGGGAGss

SSCTCCCCGCGGCTGCSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 16262 (11.72%)
Max nb of predicted sites per peak: 52
(chr15:99191776-99192682)
Mean nb of predicted sites per peak: 2.94

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: RUNX1_ChIP-seq (18/12/2025 22:36)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results