peak-motifs Peaks_ZBTB24_top_10%_(sans_contrôle

Sequence composition (test sequences)

Nb of peaks: 1660
Total seq. size: 1071 kb
Min length: 146 bp
Mean length: 645.366 bp
Max length: 7501 bp [ view peaks in genome browser : ]
[ coordinates: UCSC BED track ]
[ seq: converted purged ]
[ lengths: list distrib graph ]

Nucleotide composition profiles

Transition frequencies
Position profiles

[ 1nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Dinucleotide composition profiles

Transition frequencies
Position profiles

[ 2nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Sequence composition (ctrl sequences)

Nb of peaks: 2368
Total seq. size: 847 kb
Min length: 137 bp
Mean length: 357.813 bp
Max length: 34690 bp [ view peaks in genome browser : ]
[ coordinates: UCSC BED track ]
[ seq: converted purged ]
[ lengths: list distrib graph ]

Nucleotide composition profiles

Transition frequencies
Position profiles

[ 1nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Dinucleotide composition profiles

Transition frequencies
Position profiles

[ 2nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=186.48; evalue=3.3e-187

wwtaTaAtTTTTAAAAaTtAtaww

WWTATAATTTTTAAAAATTATAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 356 (21.45%)
Max nb of predicted sites per peak: 54
(chr2:197202027-197202894)
Mean nb of predicted sites per peak: 4.94

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=186.48; evalue=3.3e-187

wwtaTaATTTTTAAAAAATtAtww

WWATAATTTTTTAAAAATTATAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 426 (25.66%)
Max nb of predicted sites per peak: 45
(chr2:197202027-197202894)
Mean nb of predicted sites per peak: 3.63

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=186.48; evalue=3.3e-187

wwAtaATTTTtAAAAAAwAAAAww

WWTTTTWTTTTTTAAAAATTATWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 514 (30.96%)
Max nb of predicted sites per peak: 36
(chr2:197202027-197202894)
Mean nb of predicted sites per peak: 4.03

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=186.48; evalue=3.3e-187

wwttaTAATTTTAAAAATtAtaww

WWTATAATTTTTAAAATTATAAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 441 (26.57%)
Max nb of predicted sites per peak: 47
(chr2:197202027-197202894)
Mean nb of predicted sites per peak: 4.34

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=186.48; evalue=3.3e-187

wwtttaTAaTTTAAAAATTAtaww

WWTATAATTTTTAAATTATAAAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 463 (27.89%)
Max nb of predicted sites per peak: 50
(chr2:197202027-197202894)
Mean nb of predicted sites per peak: 3.81

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_7nt_test_vs_ctrl_m1

k-mer sig=224.84; evalue=1.4e-225

kcmAGGACCTggv

BCCAGGTCCTKGM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 752 (45.30%)
Max nb of predicted sites per peak: 117
(chr4:189423933-189431434)
Mean nb of predicted sites per peak: 1.92

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_test_vs_ctrl_m2

k-mer sig=106.55; evalue=2.8e-107

wwatAaATTTTTAAAAATtTatww

WWATAAATTTTTAAAAATTTATWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 339 (20.42%)
Max nb of predicted sites per peak: 54
(chr2:197202027-197202894)
Mean nb of predicted sites per peak: 4.52

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_test_vs_ctrl_m3

k-mer sig=106.55; evalue=2.8e-107

wwaataAaTTTTAAAAATttatww

WWATAAATTTTTAAAATTTATTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 436 (26.27%)
Max nb of predicted sites per peak: 49
(chr2:197202027-197202894)
Mean nb of predicted sites per peak: 3.99

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_test_vs_ctrl_m4

k-mer sig=106.55; evalue=2.8e-107

wwaTaaaTTTTTAAAAAaAtTtww

WWAAATTTTTTTAAAAATTTATWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 446 (26.87%)
Max nb of predicted sites per peak: 56
(chr2:197202027-197202894)
Mean nb of predicted sites per peak: 4.26

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_test_vs_ctrl_m5

k-mer sig=74.28; evalue=5.2e-75

wwyTTTTwTTTTyTTTaAgTtwt

AWAACTTAAARAAAAWAAAARWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 526 (31.69%)
Max nb of predicted sites per peak: 49
(chr18:66520587-66521678)
Mean nb of predicted sites per peak: 5.61

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Predicted sites on test peaks (all motifs)

[tab]
[bed]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

Thomas-Chollier M, Herrmann C, Defrance M, Sand O, Thieffry D, van Helden J. (2012). RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets. Nucleic Acids Res 40(4): e31.
Thomas-Chollier M, Darbo E, Herrmann C, Defrance M, Thieffry D, van Helden J. (2012). A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs. Nat Protoc 7(8): 1551-1568.

RSAT - peak-motifs result

Analysis: Peaks_ZBTB24_top_10%_(sans_contrôle_Empty) (18/12/2025 21:00)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results