/var/www/html/rsat/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title Top_10%_Promotor -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	473
	Sum of sequence lengths      	272409
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	575
	Possible positions           	271936
 Oligonucleotide statistics:
	Total occurrences    	263860
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	271936
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	86	1630
	2	-24	[-479,-460]	-469.5	95	1787
	3	-23	[-459,-440]	-449.5	107	2017
	4	-22	[-439,-420]	-429.5	116	2259
	5	-21	[-419,-400]	-409.5	120	2376
	6	-20	[-399,-380]	-389.5	134	2534
	7	-19	[-379,-360]	-369.5	147	2765
	8	-18	[-359,-340]	-349.5	158	3036
	9	-17	[-339,-320]	-329.5	177	3364
	10	-16	[-319,-300]	-309.5	199	3807
	11	-15	[-299,-280]	-289.5	223	4194
	12	-14	[-279,-260]	-269.5	242	4685
	13	-13	[-259,-240]	-249.5	261	5075
	14	-12	[-239,-220]	-229.5	289	5532
	15	-11	[-219,-200]	-209.5	312	6044
	16	-10	[-199,-180]	-189.5	337	6513
	17	-9	[-179,-160]	-169.5	362	6990
	18	-8	[-159,-140]	-149.5	386	7456
	19	-7	[-139,-120]	-129.5	425	8153
	20	-6	[-119,-100]	-109.5	465	8947
	21	-5	[-99,-80]	-89.5	473	9403
	22	-4	[-79,-60]	-69.5	473	9460
	23	-3	[-59,-40]	-49.5	473	9460
	24	-2	[-39,-20]	-29.5	473	9460
	25	-1	[-19,0]	-9.5	473	9460
	26	0	[1,20]	10.5	473	9460
	27	1	[21,40]	30.5	473	9460
	28	2	[41,60]	50.5	473	9460
	29	3	[61,80]	70.5	473	9459
	30	4	[81,100]	90.5	472	9388
	31	5	[101,120]	110.5	464	8869
	32	6	[121,140]	130.5	422	8077
	33	7	[141,160]	150.5	382	7410
	34	8	[161,180]	170.5	360	6937
	35	9	[181,200]	190.5	336	6464
	36	10	[201,220]	210.5	312	5999
	37	11	[221,240]	230.5	288	5472
	38	12	[241,260]	250.5	261	5036
	39	13	[261,280]	270.5	241	4642
	40	14	[281,300]	290.5	218	4145
	41	15	[301,320]	310.5	196	3765
	42	16	[321,340]	330.5	175	3329
	43	17	[341,360]	350.5	157	3015
	44	18	[361,380]	370.5	146	2736
	45	19	[381,400]	390.5	132	2507
	46	20	[401,420]	410.5	120	2367
	47	21	[421,440]	430.5	116	2242
	48	22	[441,460]	450.5	107	1993
	49	23	[461,480]	470.5	93	1769
	50	24	[481,500]	490.5	86	1528

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
gg gg 24782 128.4 49 4.8e-09 7.8e-08 7.11 1 146 142 159 197 197 196 202 240 292 379 358 443 562 516 561 694 676 716 778 843 889 820 875 893 863 869 859 819 830 888 843 748 699 653 536 541 501 431 366 343 324 279 270 252 194 192 194 207 181 126
aa aa 16074 120.0 49 6.9e-08 1.1e-06 5.96 2 107 153 143 160 149 146 204 195 231 236 260 290 282 320 363 369 426 435 486 574 585 569 575 581 611 582 538 592 555 546 515 428 406 382 377 348 286 270 250 223 194 165 144 136 135 152 116 107 82 95
tt tt 15610 101.6 49 1.5e-05 0.00024 3.62 3 110 84 106 122 137 157 179 154 190 213 222 241 226 300 318 342 422 429 487 528 528 546 549 503 586 530 552 590 544 519 512 500 396 383 383 342 395 295 280 249 211 226 199 147 145 140 129 83 92 89
cc cc 24640 99.5 49 2.7e-05 0.00044 3.36 4 143 150 169 191 208 189 222 236 308 332 384 424 466 497 577 517 631 687 676 783 763 817 855 836 816 852 885 867 847 858 857 820 649 649 614 613 512 476 460 380 372 293 279 284 247 222 229 203 156 139
ta ta 8696 71.3 49 2.0e-02 0.33 0.48 5 58 60 57 100 78 91 92 131 126 121 122 134 170 179 194 236 241 229 272 293 307 293 333 290 318 320 308 312 281 298 256 255 224 217 204 176 166 150 161 132 115 90 97 73 67 70 70 43 44 42
cg cg 12970 70.2 49 2.5e-02 0.4 0.40 6 60 58 94 85 92 137 107 127 147 175 186 225 264 271 298 311 302 383 407 426 437 438 448 469 413 445 448 441 470 402 422 380 387 349 320 308 259 238 236 199 200 174 149 139 139 120 121 100 92 72
ag ag 19714 66.3 49 5.0e-02 0.8 0.10 7 116 146 162 161 143 169 193 239 233 272 333 345 355 409 451 528 528 518 615 671 733 663 712 667 705 697 715 671 627 720 610 557 574 505 451 459 365 315 316 287 272 226 215 202 160 167 154 146 134 102
ct ct 19371 61.4 49 1.1e-01 1.8 -0.25 8 128 113 127 168 174 173 201 224 233 240 275 311 336 375 415 435 486 527 584 626 670 694 611 728 683 690 680 652 698 653 663 597 516 533 500 424 416 392 333 308 273 216 236 182 188 148 149 137 117 133
tc tc 16087 56.9 49 2.0e-01 3.3 -0.51 9 122 107 104 134 141 152 177 163 195 215 271 241 283 309 350 363 401 414 518 509 561 592 517 576 558 574 579 526 575 528 544 467 465 427 412 339 341 322 268 244 235 189 178 156 159 135 120 107 114 110
at at 9795 55.0 49 2.6e-01 4.1 -0.62 10 74 87 68 94 94 104 104 124 137 149 156 149 191 207 205 248 258 258 278 336 335 360 341 316 346 333 339 347 362 334 291 280 274 226 240 174 188 179 171 160 125 130 93 90 84 87 82 63 66 58
ga ga 16110 51.9 49 3.6e-01 5.8 -0.76 11 89 120 132 129 128 140 157 176 188 217 242 291 297 296 345 415 414 436 492 543 599 575 561 553 592 591 553 561 571 592 515 455 468 402 366 392 291 252 255 240 233 195 156 168 138 130 129 135 107 88
ac ac 12518 50.7 49 4.1e-01 6.5 -0.81 12 75 95 97 107 131 120 132 152 164 165 189 230 239 235 282 278 294 352 370 399 420 438 438 429 425 465 396 459 457 475 415 398 327 340 297 268 263 228 204 188 174 153 117 133 108 87 103 88 61 58
ca ca 17158 48.9 49 4.8e-01 7.6 -0.88 13 117 149 136 128 165 157 185 194 222 241 293 304 305 360 399 396 423 450 503 551 574 587 604 559 573 580 588 601 585 648 563 521 491 452 413 353 343 332 280 262 220 231 176 182 149 150 144 111 114 94
gc gc 20901 47.2 49 5.5e-01 8.7 -0.94 14 114 121 155 145 163 193 188 236 231 289 312 371 393 458 481 501 531 589 617 706 706 693 712 731 696 689 731 706 731 691 691 619 599 555 521 477 413 402 359 353 274 270 261 213 205 196 181 153 152 127
gt gt 12550 37.9 49 8.8e-01 14 -1.15 15 71 70 108 104 98 121 132 133 150 171 171 210 218 270 279 301 351 365 399 407 469 466 443 436 438 450 454 442 432 404 397 370 338 308 293 276 249 224 217 174 192 136 126 119 124 117 98 78 75 76
tg tg 16884 35.9 49 9.2e-01 15 -1.17 16 100 114 139 133 144 165 167 192 192 232 219 292 298 363 359 395 447 496 496 572 610 625 559 581 605 584 583 607 622 576 548 508 435 418 410 361 318 320 291 263 228 200 177 156 165 154 129 119 107 110 
 Host name	rsat
 Job started	2025-12-18.224721
 Job done	2025-12-18.224722
 Seconds	1.65
	user	1.65
	system	0.02
	cuser	0
;	csystem	0