/var/www/html/rsat/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3/results/discovered_motifs/peak-motifs_motifs_disco_compa
	html_index   	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	15	709
		file1	2	14	810
		file1	3	11	780
		file1	4	11	478
		file1	5	13	417
		file1	6	14	647
		file1	7	15	792
		file1	8	12	931
		file1	9	16	476
		file1	10	13	545
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		15		709
		file2		2		14		810
		file2		3		11		780
		file2		4		11		478
		file2		5		13		417
		file2		6		14		647
		file2		7		15		792
		file2		8		12		931
		file2		9		16		476
		file2		10		13		545
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m5 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m1 0.991 0.925 14 15 14 15 0.9333 1.0000 0.9333 D -1
oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m1 0.991 0.925 15 14 14 15 0.9333 0.9333 1.0000 D 1
oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m2 0.813 0.763 16 15 15 16 0.9375 0.9375 1.0000 D 0
oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m4 0.813 0.763 15 16 15 16 0.9375 1.0000 0.9375 D 0
oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m2 0.843 0.675 12 15 12 15 0.8000 1.0000 0.8000 D -3
oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m3 0.843 0.675 15 12 12 15 0.8000 0.8000 1.0000 D 3
oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m2 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m2 0.820 0.667 15 14 13 16 0.8125 0.8667 0.9286 D 2
oligos_6nt_mkv3_m2 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m2 oligos_7nt_mkv4_m2 0.820 0.667 14 15 13 16 0.8125 0.9286 0.8667 D -2
oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m3 0.801 0.629 14 11 11 14 0.7857 0.7857 1.0000 R 3
oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m2 0.801 0.629 11 14 11 14 0.7857 1.0000 0.7857 R 0
oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m2 0.821 0.615 13 15 12 16 0.7500 0.9231 0.8000 R -3
oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m5 0.821 0.615 15 13 12 16 0.7500 0.8000 0.9231 R -1
oligos_7nt_mkv4_m5 oligos_6nt_mkv3_m2 oligos_7nt_mkv4_m5 oligos_6nt_mkv3_m2 0.734 0.587 13 14 12 15 0.8000 0.9231 0.8571 R 1
oligos_6nt_mkv3_m2 oligos_7nt_mkv4_m5 oligos_6nt_mkv3_m2 oligos_7nt_mkv4_m5 0.734 0.587 14 13 12 15 0.8000 0.8571 0.9231 R 2
oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m3 0.789 0.578 15 11 11 15 0.7333 0.7333 1.0000 R 0
oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m2 0.789 0.578 11 15 11 15 0.7333 1.0000 0.7333 R -4
oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m4 0.720 0.540 12 16 12 16 0.7500 1.0000 0.7500 D -3
oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m3 0.720 0.540 16 12 12 16 0.7500 0.7500 1.0000 D 3 
 Host name	rsat
 Job started	2025-12-18.224751
 Job done	2025-12-18.224758
 Seconds	0.5
	user	0.5
	system	0.19
	cuser	5.27
;	csystem	0.81