RSAT - peak-motifs result

Analysis: Top_10%_Promotor (18/12/2025 22:48)

peak-motifs  -v 1 -title Top_10%_Promotor -i $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3

motif discovery
oligos_6nt_mkv3	oligos_6nt_mkv3_m1 assembly: gccaggacctg (sig=27.97; e-value=1.1e-28) RC: caggtcctggc oligos_6nt_mkv3_m2 assembly: cccgccccgc (sig=19.77; e-value=1.7e-20) RC: gcggggcggg oligos_6nt_mkv3_m3 assembly: gcggagc (sig=5.90; e-value=1.3e-06) RC: gctccgc oligos_6nt_mkv3_m4 assembly: gccaggc (sig=4.55; e-value=2.8e-05) RC: gcctggc oligos_6nt_mkv3_m5 assembly: aaagaaagg (sig=4.29; e-value=5.1e-05) RC: cctttcttt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv4	oligos_7nt_mkv4_m1 assembly: ccaggacctg (sig=20.62; e-value=2.4e-21) RC: caggtcctgg oligos_7nt_mkv4_m2 assembly: gccccgccccc (sig=8.58; e-value=2.6e-09) RC: gggggcggggc oligos_7nt_mkv4_m3 assembly: ccgcctcc (sig=3.37; e-value=0.00043) RC: ggaggcgg oligos_7nt_mkv4_m4 assembly: cccccaccccca (sig=2.65; e-value=0.0022) RC: tgggggtggggg oligos_7nt_mkv4_m5 assembly: ggcagggcc (sig=2.59; e-value=0.0026) RC: ggccctgcc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv3_m1	k-mer sig=27.97; evalue=1.1e-28 cwgcCAGGACCTgsm KSCAGGTCCTGGCWG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 220 (46.51%) Max nb of predicted sites per peak: 6  (chr22:50049381-50051473) Mean nb of predicted sites per peak: 1.60	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv3_m2	k-mer sig=19.77; evalue=1.7e-20 scCcCGCCCCGCsc GSGCGGGGCGGGGS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 156 (32.98%) Max nb of predicted sites per peak: 20  (chr17:63556337-63558493) Mean nb of predicted sites per peak: 2.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv3_m3	k-mer sig=5.90; evalue=1.3e-06 ssGCGGAGCss SSGCTCCGCSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 114 (24.10%) Max nb of predicted sites per peak: 7  (chr17:63556337-63558493) Mean nb of predicted sites per peak: 1.49	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv3_m4	k-mer sig=4.55; evalue=2.8e-05 scGCCAGGCgs SCGCCTGGCGS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 79 (16.70%) Max nb of predicted sites per peak: 3  (chr10:118502269-118502909) Mean nb of predicted sites per peak: 1.18	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv3_m5	k-mer sig=4.29; evalue=5.1e-05 rrAAAGAAAGgwa TWCCTTTCTTTYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 85 (17.97%) Max nb of predicted sites per peak: 6  (chr1:178061434-178062860) Mean nb of predicted sites per peak: 1.35	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv4_m1	k-mer sig=20.62; evalue=2.4e-21 wkcCAGGACCTgsv BSCAGGTCCTGGMW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 184 (38.90%) Max nb of predicted sites per peak: 6  (chr22:50049381-50051473) Mean nb of predicted sites per peak: 1.76	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv4_m2	k-mer sig=8.58; evalue=2.6e-09 csgCCCCGCCCCCss SSGGGGGCGGGGCSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 173 (36.58%) Max nb of predicted sites per peak: 20  (chr17:63556337-63558493) Mean nb of predicted sites per peak: 2.44	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv4_m3	k-mer sig=3.37; evalue=0.00043 csCCGCCTCCss SSGGAGGCGGSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 159 (33.62%) Max nb of predicted sites per peak: 12  (chrX:57617984-57619176) Mean nb of predicted sites per peak: 1.77	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv4_m4	k-mer sig=2.65; evalue=0.0022 csccCCCACCCCCAsc GSTGGGGGTGGGGGSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 147 (31.08%) Max nb of predicted sites per peak: 9  (chr15:66331367-66332399) Mean nb of predicted sites per peak: 1.62	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv4_m5	k-mer sig=2.59; evalue=0.0026 sgGGCAGGGCcyg CRGGCCCTGCCCS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 125 (26.43%) Max nb of predicted sites per peak: 6  (chr17:63556337-63558493) Mean nb of predicted sites per peak: 1.62	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title Top_10%_Promotor -i $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3

Warning: Not a single pattern was found in file tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/12/18/peak-motifs.2025-12-18.224716_2025-12-18.224716_XiuaJ3/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab