RSAT - peak-motifs result

Analysis: Top_10%_Distal_Intergenic (19/12/2025 06:13)

peak-motifs  -v 1 -title Top_10%_Distal_Intergenic -i $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.061239_2025-12-19.061239_Bcy8Ur/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.061239_2025-12-19.061239_Bcy8Ur

motif discovery
oligos_6nt_mkv3	oligos_6nt_mkv3_m1 assembly: gccaggaccttggc (sig=37.56; e-value=2.8e-38) RC: gccaaggtcctggc oligos_6nt_mkv3_m2 assembly: aaacaaa (sig=8.83; e-value=1.5e-09) RC: tttgttt oligos_6nt_mkv3_m3 assembly: ccttccc (sig=8.41; e-value=3.9e-09) RC: gggaagg oligos_6nt_mkv3_m4 assembly: gcctccc (sig=7.59; e-value=2.6e-08) RC: gggaggc oligos_6nt_mkv3_m5 assembly: gtgagtcac (sig=6.88; e-value=1.3e-07) RC: gtgactcac	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv4	oligos_7nt_mkv4_m1 assembly: tgccaggacctg (sig=22.29; e-value=5.1e-23) RC: caggtcctggca oligos_7nt_mkv4_m2 assembly: tgactca (sig=4.11; e-value=7.8e-05) RC: tgagtca oligos_7nt_mkv4_m3 assembly: ccccacc (sig=2.97; e-value=0.0011) RC: ggtgggg oligos_7nt_mkv4_m4 assembly: cccttcc (sig=2.75; e-value=0.0018) RC: ggaaggg oligos_7nt_mkv4_m5 assembly: cactgca (sig=2.03; e-value=0.0093) RC: tgcagtg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv3_m1	k-mer sig=37.56; evalue=2.8e-38 ctgcCAGGACCTkgsmsb VSKSCMAGGTCCTGGCAG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 317 (47.38%) Max nb of predicted sites per peak: 26  (chr8:1286541-1288097) Mean nb of predicted sites per peak: 1.49	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv3_m2	k-mer sig=8.83; evalue=1.5e-09 rwAAACAAAwa TWTTTGTTTWY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 155 (23.17%) Max nb of predicted sites per peak: 6  (chr8:98769356-98770563) Mean nb of predicted sites per peak: 1.43	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv3_m3	k-mer sig=8.41; evalue=3.9e-09 yyCCTTCCcks SMGGGAAGGRR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 102 (15.25%) Max nb of predicted sites per peak: 6  (chr22:28211855-28212981) Mean nb of predicted sites per peak: 1.28	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv3_m4	k-mer sig=7.59; evalue=2.6e-08 ccgCCTCCCms SKGGGAGGCGG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 142 (21.23%) Max nb of predicted sites per peak: 8  (chr6:157007574-157008535) Mean nb of predicted sites per peak: 1.54	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv3_m5	k-mer sig=6.88; evalue=1.3e-07 ssGTGAGTCACys SRGTGACTCACSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 123 (18.39%) Max nb of predicted sites per peak: 6  (chr20:39632091-39632749) Mean nb of predicted sites per peak: 1.62	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv4_m1	k-mer sig=22.29; evalue=5.1e-23 sctkCCAGGACCTggs SCCAGGTCCTGGMAGS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 318 (47.53%) Max nb of predicted sites per peak: 28  (chr8:1286541-1288097) Mean nb of predicted sites per peak: 1.67	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv4_m2	k-mer sig=4.11; evalue=7.8e-05 arTGACTCAyh DRTGAGTCAYT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 114 (17.04%) Max nb of predicted sites per peak: 3  (chr8:140227382-140228363) Mean nb of predicted sites per peak: 1.17	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv4_m3	k-mer sig=2.97; evalue=0.0011 ssCCCCACCyc GRGGTGGGGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 131 (19.58%) Max nb of predicted sites per peak: 18  (chrY:134912-137348) Mean nb of predicted sites per peak: 2.08	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv4_m4	k-mer sig=2.75; evalue=0.0018 ytCCCTTCCak MTGGAAGGGAR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 112 (16.74%) Max nb of predicted sites per peak: 87  (chr4:49150975-49151838) Mean nb of predicted sites per peak: 7.88	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv4_m5	k-mer sig=2.03; evalue=0.0093 vwCACTGCAby RVTGCAGTGWB	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 125 (18.68%) Max nb of predicted sites per peak: 12  (chr8:1286541-1288097) Mean nb of predicted sites per peak: 1.48	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title Top_10%_Distal_Intergenic -i $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.061239_2025-12-19.061239_Bcy8Ur/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.061239_2025-12-19.061239_Bcy8Ur

Warning: Not a single pattern was found in file tmp/www-data/2025/12/19/peak-motifs.2025-12-19.061239_2025-12-19.061239_Bcy8Ur/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/12/19/peak-motifs.2025-12-19.061239_2025-12-19.061239_Bcy8Ur/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab