peak-motifs RUNX_top

Motif discovery

Motif 1 oligos_6nt_mkv4_m1

k-mer sig=18.16; evalue=6.9e-19

ssCGCCCGsc

GSCGGGCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1730 (17.30%)
Max nb of predicted sites per peak: 18
(chr1:110052109-110052565)
Mean nb of predicted sites per peak: 2.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv4_m2

k-mer sig=17.72; evalue=1.9e-18

ttCTTTTCyt

ARGAAAAGAA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 981 (9.81%)
Max nb of predicted sites per peak: 19
(chr11:114264825-114265007)
Mean nb of predicted sites per peak: 1.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv4_m3

k-mer sig=13.23; evalue=5.9e-14

ssCGrGCGcg

CGCGCYCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1646 (16.46%)
Max nb of predicted sites per peak: 19
(chr1:110052109-110052565)
Mean nb of predicted sites per peak: 2.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv4_m4

k-mer sig=9.82; evalue=1.5e-10

ccACCGCrsc

GSYGCGGTGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1162 (11.62%)
Max nb of predicted sites per peak: 7
(chr10:42738215-42738717)
Mean nb of predicted sites per peak: 1.24

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv4_m5

k-mer sig=9.47; evalue=3.4e-10

gsCTGGGCAws

SWTGCCCAGSC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1723 (17.23%)
Max nb of predicted sites per peak: 7
(chr11:411413-411710)
Mean nb of predicted sites per peak: 1.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=22.59; evalue=2.6e-23

sssgsCcgCGCCGCCcCggCCcss

SSGGGCCGGGGCGGCGCGGSCSSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1531 (15.31%)
Max nb of predicted sites per peak: 104
(chr1:110052109-110052565)
Mean nb of predicted sites per peak: 7.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=22.59; evalue=2.6e-23

svggCgCCgCgCcCcGCCCscsss

SSSGSGGGCGGGGCGCGGCGCCBS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1655 (16.55%)
Max nb of predicted sites per peak: 93
(chr1:110052109-110052565)
Mean nb of predicted sites per peak: 6.49

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=22.59; evalue=2.6e-23

cvggssCsCGCCmCgcCGCCCgsc

GSCGGGCGGCGKGGCGSGSSCCBG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2385 (23.85%)
Max nb of predicted sites per peak: 66
(chr1:110052109-110052565)
Mean nb of predicted sites per peak: 3.85

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=18.51; evalue=3.1e-19

ssgGGCCGGGmGggGkg

CMCCCCKCCCGGCCCSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1793 (17.93%)
Max nb of predicted sites per peak: 21
(chr10:76585404-76585878)
Mean nb of predicted sites per peak: 2.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

k-mer sig=18.51; evalue=3.1e-19

ssgGGCCGGCCCss

SSGGGCCGGCCCSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 732 (7.32%)
Max nb of predicted sites per peak: 26
(chr1:1051419-1052244)
Mean nb of predicted sites per peak: 4.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv5_m1

k-mer sig=12.67; evalue=2.1e-13

twATTTTTAdw

WHTAAAAATWA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2948 (29.48%)
Max nb of predicted sites per peak: 16
(chr10:3928342-3928524)
Mean nb of predicted sites per peak: 1.78

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv5_m2

k-mer sig=6.63; evalue=2.3e-07

ssCGCCCTCcc

GGGAGGGCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1789 (17.89%)
Max nb of predicted sites per peak: 14
(chr10:99185685-99186250)
Mean nb of predicted sites per peak: 1.73

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv5_m3

k-mer sig=6.46; evalue=3.5e-07

ssCGGCTGCsss

SSSGCAGCCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 774 (7.74%)
Max nb of predicted sites per peak: 18
(chr1:145208746-145209620)
Mean nb of predicted sites per peak: 2.44

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv5_m4

k-mer sig=6.09; evalue=8.1e-07

ssCGCCCACsc

GSGTGGGCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1478 (14.78%)
Max nb of predicted sites per peak: 12
(chr10:33257210-33257392)
Mean nb of predicted sites per peak: 1.59

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv5_m5

k-mer sig=5.67; evalue=2.1e-06

twCTTTTTCwt

AWGAAAAAGWA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 623 (6.23%)
Max nb of predicted sites per peak: 4
(chr10:68184143-68184325)
Mean nb of predicted sites per peak: 1.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

k-mer sig=6.39; evalue=4.1e-07

ssCCGCCGCCss

SSGGCGGCGGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1578 (15.78%)
Max nb of predicted sites per peak: 24
(chr1:120611458-120612648)
Mean nb of predicted sites per peak: 2.56

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

k-mer sig=5.97; evalue=1.1e-06

scgCCCGCCcCcsc

GSGGGGGCGGGCGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1874 (18.74%)
Max nb of predicted sites per peak: 23
(chr1:114471826-114472711)
Mean nb of predicted sites per peak: 2.42

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 positions_7nt_m3

k-mer sig=5.87; evalue=1.3e-06

sssGGCCGGCCsss

SSSGGCCGGCCSSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 845 (8.45%)
Max nb of predicted sites per peak: 46
(chr10:32259049-32260423)
Mean nb of predicted sites per peak: 4.42

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 positions_7nt_m4

k-mer sig=5.47; evalue=3.4e-06

ssGgCGGCGCCGcCss

SSGGCGGCGCCGCCSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 773 (7.73%)
Max nb of predicted sites per peak: 46
(chr1:1051419-1052244)
Mean nb of predicted sites per peak: 6.96

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 positions_7nt_m5

k-mer sig=6.39; evalue=4.1e-07

ssCcGCCGCGGCgGss

SSCCGCCGCGGCGGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1147 (11.47%)
Max nb of predicted sites per peak: 48
(chr10:124134032-124134493)
Mean nb of predicted sites per peak: 5.91

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: RUNX_top_10k (19/12/2025 07:09)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results