position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title 0th_first_ZBTB_no_control -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 100 Sum of sequence lengths 83829 Min sequence length 0 Max sequence length 1000 Average sequence length 838 Possible positions 83829 Sequences: # length ID 1 1000 chr2:174218437-174220818 2 1000 chr1:228673553-228675948 3 1000 chr16:57350536-57351887 4 702 chr3:12882675-12883377 5 1000 chr22:41864473-41865516 6 591 chr6:166446172-166446763 7 922 chr8:66976017-66976939 8 1000 chr10:63659488-63662261 9 1000 chr2:44588802-44590272 10 865 chr17:21002238-21003103 11 1000 chr7:99716258-99717734 12 1000 chr20:4043730-4046154 13 1000 chr12:95817690-95818691 14 1000 chr3:129117597-129118630 15 1000 chr17:76943249-76944382 16 562 chr5:96518888-96519450 17 734 chr7:72725503-72726237 18 1000 chr3:164621023-164623474 19 1000 chr6:110501270-110502659 20 525 chr6:137397814-137398339 21 574 chr15:64443453-64444027 22 658 chr20:39632091-39632749 23 1000 chr4:189423933-189431434 24 1000 chr8:1410888-1413686 25 1000 chr8:1286541-1288097 26 1000 chr18:31862638-31864787 27 1000 chr11:22940855-22942210 28 806 chr4:109571211-109572017 29 748 chr11:9060337-9061085 30 862 chr1:94375127-94375989 31 1000 chr1:121484068-121485393 32 895 chr12:25964342-25965237 33 727 chr18:831767-832494 34 1000 chr8:95283468-95284824 35 1000 chr17:63556337-63558493 36 741 chr12:97143644-97144385 37 711 chr9:33417976-33418687 38 1000 chr3:27762250-27763385 39 658 chr12:50316760-50317418 40 686 chr3:4344940-4345626 41 772 chr7:111201290-111202062 42 624 chr5:142784106-142784730 43 425 chr3:168867249-168867674 44 1000 chr12:104448386-104449399 45 791 chr14:24710867-24711658 46 1000 chr18:71460101-71461469 47 1000 chr3:52865347-52866402 48 1000 chr10:120206987-120208228 49 1000 chr1:152488566-152489760 50 374 chr12:58287713-58288087 51 638 chr2:177005564-177006202 52 557 chr11:34607357-34607914 53 1000 chr10:101328383-101330041 54 1000 chr6:159555612-159557190 55 817 chr19:27731979-27732796 56 1000 chr16:88268463-88270118 57 1000 chr10:54784464-54786469 58 835 chr7:106211224-106212059 59 678 chr7:119112288-119112966 60 390 chr2:89249768-89250158 61 747 chr5:159333505-159334252 62 1000 chr7:100796531-100797957 63 1000 chr16:87296120-87297594 64 1000 chr1:113930536-113932836 65 840 chr17:53508091-53508931 66 1000 chr6:159531317-159532417 67 1000 chr12:49207818-49209189 68 909 chr19:50141356-50142265 69 1000 chr21:46432264-46434012 70 1000 chr7:151688721-151689736 71 559 chr17:34258690-34259249 72 1000 chr1:20959055-20961366 73 845 chr9:126044413-126045258 74 1000 chr13:27346700-27348356 75 904 chr2:12630871-12631775 76 1000 chr20:46860502-46861974 77 883 chr22:49700466-49701349 78 1000 chr5:71834842-71835992 79 755 chr11:61792672-61793427 80 703 chr1:160645204-160645907 81 530 chr19:7616026-7616556 82 1000 chr19:54483710-54484983 83 423 chr12:118795097-118795520 84 1000 chr8:99846783-99848474 85 548 chr8:116990148-116990696 86 809 chr6:37016163-37016972 87 1000 chr2:25894705-25896405 88 1000 chr22:50049381-50051473 89 370 chr3:49711346-49711716 90 584 chr2:108905249-108905833 91 423 chr14:78257729-78258152 92 887 chr17:55161540-55162427 93 710 chr14:99700882-99701592 94 1000 chr15:79243593-79244707 95 534 chr19:37708517-37709051 96 985 chr8:38592052-38593037 97 616 chr11:118016350-118016966 98 1000 chr18:72530865-72531916 99 397 chr11:75243145-75243542 100 1000 chr18:8416149-8418021 Oligonucleotide statistics: Total occurrences 79483 Position interval parameters: Position interval 20 Number of windows 50 Total positions 83829 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 50 993 2 -24 [-479,-460] -469.5 51 1002 3 -23 [-459,-440] -449.5 56 1061 4 -22 [-439,-420] -429.5 59 1148 5 -21 [-419,-400] -409.5 64 1236 6 -20 [-399,-380] -389.5 66 1302 7 -19 [-379,-360] -369.5 72 1389 8 -18 [-359,-340] -349.5 77 1500 9 -17 [-339,-320] -329.5 80 1580 10 -16 [-319,-300] -309.5 83 1640 11 -15 [-299,-280] -289.5 87 1698 12 -14 [-279,-260] -269.5 93 1810 13 -13 [-259,-240] -249.5 93 1860 14 -12 [-239,-220] -229.5 93 1860 15 -11 [-219,-200] -209.5 96 1897 16 -10 [-199,-180] -189.5 100 1969 17 -9 [-179,-160] -169.5 100 2000 18 -8 [-159,-140] -149.5 100 2000 19 -7 [-139,-120] -129.5 100 2000 20 -6 [-119,-100] -109.5 100 2000 21 -5 [-99,-80] -89.5 100 2000 22 -4 [-79,-60] -69.5 100 2000 23 -3 [-59,-40] -49.5 100 2000 24 -2 [-39,-20] -29.5 100 2000 25 -1 [-19,0] -9.5 100 2000 26 0 [1,20] 10.5 100 2000 27 1 [21,40] 30.5 100 2000 28 2 [41,60] 50.5 100 2000 29 3 [61,80] 70.5 100 2000 30 4 [81,100] 90.5 100 2000 31 5 [101,120] 110.5 100 2000 32 6 [121,140] 130.5 100 2000 33 7 [141,160] 150.5 100 2000 34 8 [161,180] 170.5 100 2000 35 9 [181,200] 190.5 100 1962 36 10 [201,220] 210.5 96 1894 37 11 [221,240] 230.5 93 1860 38 12 [241,260] 250.5 93 1860 39 13 [261,280] 270.5 93 1803 40 14 [281,300] 290.5 86 1693 41 15 [301,320] 310.5 83 1638 42 16 [321,340] 330.5 80 1574 43 17 [341,360] 350.5 77 1492 44 18 [361,380] 370.5 72 1383 45 19 [381,400] 390.5 66 1301 46 20 [401,420] 410.5 64 1231 47 21 [421,440] 430.5 59 1144 48 22 [441,460] 450.5 56 1057 49 23 [461,480] 470.5 50 1000 50 24 [481,500] 490.5 50 992 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | a | 19488 | 87.5 | 49 | 5.9e-04 | 0.0024 | 2.63 | 1 | 261 | 277 | 268 | 281 | 263 | 313 | 342 | 356 | 407 | 360 | 380 | 417 | 454 | 429 | 445 | 457 | 467 | 476 | 495 | 504 | 513 | 466 | 452 | 475 | 441 | 450 | 461 | 410 | 466 | 497 | 500 | 494 | 487 | 463 | 463 | 438 | 403 | 404 | 393 | 385 | 383 | 329 | 353 | 317 | 263 | 233 | 252 | 208 | 204 | 233 |
| t | t | 19393 | 59.2 | 49 | 1.5e-01 | 0.6 | 0.22 | 2 | 258 | 257 | 244 | 266 | 281 | 307 | 313 | 337 | 373 | 378 | 436 | 424 | 431 | 467 | 460 | 475 | 502 | 461 | 465 | 433 | 463 | 493 | 471 | 465 | 477 | 455 | 454 | 468 | 446 | 461 | 484 | 447 | 403 | 467 | 441 | 391 | 426 | 450 | 426 | 383 | 386 | 377 | 347 | 275 | 273 | 297 | 228 | 225 | 230 | 216 |
| c | c | 20154 | 47.6 | 49 | 5.3e-01 | 2.1 | -0.33 | 3 | 227 | 238 | 284 | 279 | 314 | 305 | 337 | 350 | 371 | 402 | 403 | 439 | 440 | 425 | 450 | 455 | 472 | 472 | 447 | 498 | 466 | 506 | 445 | 463 | 472 | 477 | 506 | 541 | 456 | 474 | 450 | 451 | 464 | 510 | 458 | 470 | 454 | 437 | 460 | 442 | 391 | 420 | 344 | 320 | 319 | 297 | 278 | 259 | 258 | 258 |
| g | g | 20448 | 41.4 | 49 | 7.7e-01 | 3.1 | -0.49 | 4 | 247 | 230 | 265 | 288 | 309 | 297 | 332 | 397 | 377 | 453 | 410 | 434 | 455 | 459 | 448 | 482 | 473 | 504 | 493 | 479 | 488 | 455 | 526 | 479 | 480 | 502 | 469 | 444 | 510 | 494 | 484 | 508 | 544 | 460 | 473 | 467 | 437 | 429 | 415 | 423 | 406 | 368 | 351 | 348 | 313 | 300 | 291 | 265 | 242 | 245 |
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