position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title 0th_first_ZBTB_no_control -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab Oligo length 2 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 100 Sum of sequence lengths 83829 Min sequence length 0 Max sequence length 1000 Average sequence length 838 Possible positions 83729 Sequences: # length ID 1 1000 chr2:174218437-174220818 2 1000 chr1:228673553-228675948 3 1000 chr16:57350536-57351887 4 702 chr3:12882675-12883377 5 1000 chr22:41864473-41865516 6 591 chr6:166446172-166446763 7 922 chr8:66976017-66976939 8 1000 chr10:63659488-63662261 9 1000 chr2:44588802-44590272 10 865 chr17:21002238-21003103 11 1000 chr7:99716258-99717734 12 1000 chr20:4043730-4046154 13 1000 chr12:95817690-95818691 14 1000 chr3:129117597-129118630 15 1000 chr17:76943249-76944382 16 562 chr5:96518888-96519450 17 734 chr7:72725503-72726237 18 1000 chr3:164621023-164623474 19 1000 chr6:110501270-110502659 20 525 chr6:137397814-137398339 21 574 chr15:64443453-64444027 22 658 chr20:39632091-39632749 23 1000 chr4:189423933-189431434 24 1000 chr8:1410888-1413686 25 1000 chr8:1286541-1288097 26 1000 chr18:31862638-31864787 27 1000 chr11:22940855-22942210 28 806 chr4:109571211-109572017 29 748 chr11:9060337-9061085 30 862 chr1:94375127-94375989 31 1000 chr1:121484068-121485393 32 895 chr12:25964342-25965237 33 727 chr18:831767-832494 34 1000 chr8:95283468-95284824 35 1000 chr17:63556337-63558493 36 741 chr12:97143644-97144385 37 711 chr9:33417976-33418687 38 1000 chr3:27762250-27763385 39 658 chr12:50316760-50317418 40 686 chr3:4344940-4345626 41 772 chr7:111201290-111202062 42 624 chr5:142784106-142784730 43 425 chr3:168867249-168867674 44 1000 chr12:104448386-104449399 45 791 chr14:24710867-24711658 46 1000 chr18:71460101-71461469 47 1000 chr3:52865347-52866402 48 1000 chr10:120206987-120208228 49 1000 chr1:152488566-152489760 50 374 chr12:58287713-58288087 51 638 chr2:177005564-177006202 52 557 chr11:34607357-34607914 53 1000 chr10:101328383-101330041 54 1000 chr6:159555612-159557190 55 817 chr19:27731979-27732796 56 1000 chr16:88268463-88270118 57 1000 chr10:54784464-54786469 58 835 chr7:106211224-106212059 59 678 chr7:119112288-119112966 60 390 chr2:89249768-89250158 61 747 chr5:159333505-159334252 62 1000 chr7:100796531-100797957 63 1000 chr16:87296120-87297594 64 1000 chr1:113930536-113932836 65 840 chr17:53508091-53508931 66 1000 chr6:159531317-159532417 67 1000 chr12:49207818-49209189 68 909 chr19:50141356-50142265 69 1000 chr21:46432264-46434012 70 1000 chr7:151688721-151689736 71 559 chr17:34258690-34259249 72 1000 chr1:20959055-20961366 73 845 chr9:126044413-126045258 74 1000 chr13:27346700-27348356 75 904 chr2:12630871-12631775 76 1000 chr20:46860502-46861974 77 883 chr22:49700466-49701349 78 1000 chr5:71834842-71835992 79 755 chr11:61792672-61793427 80 703 chr1:160645204-160645907 81 530 chr19:7616026-7616556 82 1000 chr19:54483710-54484983 83 423 chr12:118795097-118795520 84 1000 chr8:99846783-99848474 85 548 chr8:116990148-116990696 86 809 chr6:37016163-37016972 87 1000 chr2:25894705-25896405 88 1000 chr22:50049381-50051473 89 370 chr3:49711346-49711716 90 584 chr2:108905249-108905833 91 423 chr14:78257729-78258152 92 887 chr17:55161540-55162427 93 710 chr14:99700882-99701592 94 1000 chr15:79243593-79244707 95 534 chr19:37708517-37709051 96 985 chr8:38592052-38593037 97 616 chr11:118016350-118016966 98 1000 chr18:72530865-72531916 99 397 chr11:75243145-75243542 100 1000 chr18:8416149-8418021 Oligonucleotide statistics: Total occurrences 79351 Position interval parameters: Position interval 20 Number of windows 50 Total positions 83729 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 50 993 2 -24 [-479,-460] -469.5 51 1002 3 -23 [-459,-440] -449.5 56 1061 4 -22 [-439,-420] -429.5 59 1148 5 -21 [-419,-400] -409.5 64 1236 6 -20 [-399,-380] -389.5 66 1302 7 -19 [-379,-360] -369.5 72 1389 8 -18 [-359,-340] -349.5 77 1500 9 -17 [-339,-320] -329.5 80 1580 10 -16 [-319,-300] -309.5 83 1640 11 -15 [-299,-280] -289.5 87 1698 12 -14 [-279,-260] -269.5 93 1810 13 -13 [-259,-240] -249.5 93 1860 14 -12 [-239,-220] -229.5 93 1860 15 -11 [-219,-200] -209.5 96 1897 16 -10 [-199,-180] -189.5 100 1969 17 -9 [-179,-160] -169.5 100 2000 18 -8 [-159,-140] -149.5 100 2000 19 -7 [-139,-120] -129.5 100 2000 20 -6 [-119,-100] -109.5 100 2000 21 -5 [-99,-80] -89.5 100 2000 22 -4 [-79,-60] -69.5 100 2000 23 -3 [-59,-40] -49.5 100 2000 24 -2 [-39,-20] -29.5 100 2000 25 -1 [-19,0] -9.5 100 2000 26 0 [1,20] 10.5 100 2000 27 1 [21,40] 30.5 100 2000 28 2 [41,60] 50.5 100 2000 29 3 [61,80] 70.5 100 2000 30 4 [81,100] 90.5 100 2000 31 5 [101,120] 110.5 100 2000 32 6 [121,140] 130.5 100 2000 33 7 [141,160] 150.5 100 2000 34 8 [161,180] 170.5 100 2000 35 9 [181,200] 190.5 100 1958 36 10 [201,220] 210.5 96 1891 37 11 [221,240] 230.5 93 1860 38 12 [241,260] 250.5 93 1860 39 13 [261,280] 270.5 93 1796 40 14 [281,300] 290.5 86 1690 41 15 [301,320] 310.5 83 1635 42 16 [321,340] 330.5 80 1571 43 17 [341,360] 350.5 77 1487 44 18 [361,380] 370.5 72 1377 45 19 [381,400] 390.5 66 1299 46 20 [401,420] 410.5 64 1226 47 21 [421,440] 430.5 59 1141 48 22 [441,460] 450.5 55 1051 49 23 [461,480] 470.5 50 1000 50 24 [481,500] 490.5 50 942 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| aa | aa | 5555 | 150.6 | 49 | 2.8e-12 | 4.6e-11 | 10.34 | 1 | 74 | 100 | 73 | 67 | 60 | 92 | 116 | 96 | 116 | 100 | 101 | 124 | 118 | 109 | 130 | 154 | 130 | 136 | 173 | 162 | 186 | 138 | 140 | 140 | 132 | 126 | 131 | 92 | 125 | 148 | 147 | 146 | 119 | 119 | 146 | 119 | 115 | 114 | 105 | 101 | 107 | 72 | 107 | 94 | 93 | 47 | 62 | 50 | 45 | 58 |
| tt | tt | 5663 | 88.3 | 49 | 4.9e-04 | 0.0079 | 2.10 | 2 | 80 | 68 | 76 | 65 | 76 | 101 | 100 | 96 | 111 | 111 | 139 | 130 | 120 | 145 | 158 | 156 | 159 | 136 | 138 | 130 | 149 | 140 | 149 | 144 | 139 | 117 | 129 | 128 | 122 | 147 | 155 | 132 | 96 | 132 | 130 | 95 | 132 | 114 | 122 | 103 | 106 | 122 | 94 | 75 | 77 | 85 | 65 | 53 | 73 | 43 |
| cc | cc | 6205 | 85.9 | 49 | 8.8e-04 | 0.014 | 1.85 | 3 | 53 | 72 | 101 | 93 | 94 | 87 | 114 | 104 | 107 | 129 | 116 | 143 | 152 | 121 | 118 | 135 | 151 | 128 | 122 | 158 | 135 | 170 | 132 | 146 | 144 | 149 | 159 | 184 | 136 | 139 | 129 | 123 | 130 | 161 | 126 | 157 | 150 | 132 | 163 | 143 | 119 | 131 | 100 | 102 | 105 | 99 | 93 | 91 | 80 | 79 |
| ta | ta | 3186 | 70.1 | 49 | 2.6e-02 | 0.41 | 0.39 | 4 | 46 | 39 | 36 | 48 | 41 | 35 | 41 | 55 | 79 | 45 | 79 | 73 | 93 | 82 | 71 | 69 | 92 | 82 | 72 | 72 | 82 | 74 | 77 | 74 | 79 | 78 | 84 | 73 | 83 | 69 | 90 | 78 | 69 | 91 | 64 | 55 | 67 | 82 | 67 | 59 | 68 | 49 | 55 | 43 | 30 | 48 | 49 | 32 | 34 | 33 |
| gg | gg | 6313 | 56.1 | 49 | 2.2e-01 | 3.6 | -0.56 | 5 | 79 | 54 | 77 | 86 | 91 | 81 | 103 | 122 | 117 | 154 | 127 | 141 | 133 | 137 | 144 | 150 | 159 | 162 | 135 | 150 | 154 | 137 | 180 | 129 | 139 | 154 | 145 | 125 | 151 | 143 | 165 | 170 | 182 | 141 | 150 | 143 | 146 | 121 | 139 | 138 | 129 | 111 | 102 | 110 | 106 | 91 | 94 | 77 | 71 | 68 |
| ca | ca | 5688 | 52.2 | 49 | 3.5e-01 | 5.6 | -0.75 | 6 | 80 | 68 | 84 | 91 | 88 | 97 | 101 | 97 | 117 | 111 | 105 | 113 | 131 | 121 | 144 | 130 | 123 | 140 | 128 | 155 | 129 | 139 | 127 | 118 | 122 | 124 | 143 | 131 | 133 | 155 | 136 | 146 | 156 | 137 | 142 | 136 | 112 | 102 | 120 | 116 | 102 | 122 | 103 | 80 | 78 | 70 | 74 | 58 | 77 | 76 |
| at | at | 3802 | 51.9 | 49 | 3.6e-01 | 5.8 | -0.76 | 7 | 52 | 53 | 56 | 67 | 53 | 65 | 61 | 61 | 78 | 65 | 84 | 71 | 99 | 90 | 84 | 82 | 108 | 82 | 78 | 86 | 81 | 100 | 92 | 89 | 73 | 78 | 88 | 85 | 94 | 85 | 117 | 101 | 93 | 95 | 77 | 77 | 89 | 90 | 85 | 77 | 86 | 73 | 75 | 53 | 53 | 53 | 42 | 41 | 40 | 45 |
| tc | tc | 4908 | 49.6 | 49 | 4.5e-01 | 7.2 | -0.86 | 8 | 65 | 83 | 61 | 59 | 73 | 83 | 80 | 75 | 89 | 92 | 96 | 103 | 108 | 112 | 116 | 115 | 120 | 111 | 121 | 102 | 107 | 137 | 102 | 107 | 122 | 116 | 114 | 129 | 97 | 110 | 114 | 113 | 110 | 132 | 123 | 99 | 121 | 119 | 117 | 110 | 97 | 109 | 87 | 71 | 82 | 70 | 49 | 59 | 61 | 60 |
| cg | cg | 2275 | 46.0 | 49 | 6.0e-01 | 9.5 | -0.98 | 9 | 20 | 27 | 35 | 21 | 37 | 35 | 32 | 45 | 39 | 42 | 45 | 50 | 45 | 49 | 55 | 57 | 52 | 53 | 59 | 43 | 53 | 42 | 67 | 47 | 56 | 61 | 46 | 54 | 53 | 43 | 50 | 53 | 63 | 56 | 45 | 47 | 58 | 48 | 48 | 46 | 42 | 53 | 41 | 52 | 47 | 41 | 40 | 32 | 27 | 23 |
| ct | ct | 5964 | 45.8 | 49 | 6.0e-01 | 9.7 | -0.99 | 10 | 74 | 71 | 64 | 74 | 95 | 86 | 90 | 104 | 108 | 120 | 136 | 133 | 112 | 134 | 132 | 133 | 146 | 151 | 138 | 142 | 149 | 155 | 118 | 152 | 150 | 143 | 158 | 171 | 134 | 137 | 134 | 129 | 115 | 156 | 145 | 129 | 134 | 155 | 129 | 137 | 126 | 114 | 99 | 85 | 88 | 87 | 71 | 78 | 74 | 69 |
| gt | gt | 3914 | 44.5 | 49 | 6.6e-01 | 10 | -1.02 | 11 | 55 | 56 | 53 | 53 | 63 | 58 | 58 | 78 | 67 | 84 | 72 | 88 | 98 | 103 | 92 | 90 | 91 | 99 | 110 | 69 | 90 | 94 | 106 | 93 | 112 | 105 | 81 | 94 | 92 | 90 | 76 | 85 | 98 | 87 | 83 | 86 | 83 | 88 | 79 | 68 | 69 | 70 | 72 | 60 | 63 | 60 | 49 | 56 | 37 | 51 |
| ag | ag | 6254 | 43.8 | 49 | 6.8e-01 | 11 | -1.04 | 12 | 79 | 78 | 87 | 89 | 87 | 92 | 104 | 130 | 130 | 116 | 118 | 139 | 155 | 146 | 135 | 139 | 140 | 159 | 157 | 158 | 155 | 136 | 133 | 157 | 157 | 147 | 141 | 134 | 165 | 163 | 147 | 165 | 173 | 149 | 152 | 141 | 124 | 121 | 119 | 128 | 118 | 107 | 103 | 101 | 73 | 83 | 95 | 71 | 81 | 77 |
| ga | ga | 5022 | 39.7 | 49 | 8.2e-01 | 13 | -1.12 | 13 | 60 | 70 | 75 | 74 | 76 | 84 | 87 | 99 | 98 | 102 | 100 | 101 | 119 | 106 | 101 | 117 | 105 | 127 | 113 | 127 | 110 | 118 | 115 | 135 | 108 | 114 | 113 | 102 | 130 | 130 | 130 | 119 | 140 | 112 | 122 | 127 | 102 | 105 | 100 | 109 | 103 | 85 | 90 | 97 | 61 | 65 | 68 | 67 | 54 | 50 |
| tg | tg | 5581 | 38.5 | 49 | 8.6e-01 | 14 | -1.14 | 14 | 67 | 67 | 71 | 93 | 91 | 88 | 92 | 111 | 94 | 130 | 122 | 118 | 110 | 128 | 115 | 135 | 131 | 131 | 134 | 129 | 124 | 142 | 143 | 139 | 137 | 144 | 127 | 137 | 144 | 135 | 125 | 124 | 127 | 112 | 118 | 142 | 106 | 135 | 115 | 110 | 113 | 96 | 107 | 82 | 81 | 91 | 63 | 78 | 62 | 65 |
| gc | gc | 5177 | 30.9 | 49 | 9.8e-01 | 16 | -1.20 | 15 | 53 | 50 | 60 | 75 | 79 | 74 | 84 | 98 | 95 | 113 | 110 | 104 | 105 | 113 | 111 | 125 | 118 | 116 | 135 | 133 | 134 | 106 | 124 | 121 | 121 | 128 | 130 | 123 | 137 | 131 | 113 | 134 | 124 | 120 | 118 | 110 | 105 | 115 | 97 | 107 | 104 | 102 | 87 | 80 | 83 | 83 | 79 | 65 | 80 | 65 |
| ac | ac | 3844 | 29.0 | 49 | 9.9e-01 | 16 | -1.20 | 16 | 56 | 46 | 52 | 56 | 63 | 64 | 61 | 69 | 83 | 78 | 77 | 83 | 82 | 84 | 96 | 82 | 89 | 99 | 87 | 98 | 90 | 92 | 87 | 89 | 79 | 99 | 100 | 99 | 82 | 101 | 88 | 82 | 102 | 100 | 88 | 99 | 75 | 79 | 82 | 78 | 72 | 75 | 65 | 68 | 44 | 49 | 52 | 43 | 38 | 42 |
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