/var/www/html/rsat/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/results/discovered_motifs/peak-motifs_motifs_disco_compa
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	17	142
		file1	2	14	244
		file1	3	17	179
		file1	4	21	142
		file1	5	11	192
		file1	6	18	196
		file1	7	15	207
		file1	8	13	162
		file1	9	13	203
		file1	10	11	224
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		17		142
		file2		2		14		244
		file2		3		17		179
		file2		4		21		142
		file2		5		11		192
		file2		6		18		196
		file2		7		15		207
		file2		8		13		162
		file2		9		13		203
		file2		10		11		224
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 1.000 1.000 21 21 21 21 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 1.000 1.000 18 18 18 18 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m2 0.981 0.916 14 15 14 15 0.9333 1.0000 0.9333 D -1
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m2 0.981 0.916 15 14 14 15 0.9333 0.9333 1.0000 D 1
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 0.972 0.818 18 17 16 19 0.8421 0.8889 0.9412 D 2
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 0.972 0.818 17 18 16 19 0.8421 0.9412 0.8889 D -2
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m4 0.875 0.709 17 21 17 21 0.8095 1.0000 0.8095 D 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m3 0.875 0.709 21 17 17 21 0.8095 0.8095 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m2 0.905 0.704 17 15 14 18 0.7778 0.8235 0.9333 D 3
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m3 0.905 0.704 15 17 14 18 0.7778 0.9333 0.8235 D -3
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m3 0.902 0.651 14 17 13 18 0.7222 0.9286 0.7647 D -4
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m2 0.902 0.651 17 14 13 18 0.7222 0.7647 0.9286 D 4
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m2 0.868 0.620 21 15 15 21 0.7143 0.7143 1.0000 D 3
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m4 0.868 0.620 15 21 15 21 0.7143 1.0000 0.7143 D -3
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m4 0.853 0.569 14 21 14 21 0.6667 1.0000 0.6667 D -4
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m2 0.853 0.569 21 14 14 21 0.6667 0.6667 1.0000 D 4
oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m4 0.810 0.540 17 13 12 18 0.6667 0.7059 0.9231 R 5
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m3 0.810 0.540 13 17 12 18 0.6667 0.9231 0.7059 R 1
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m5 0.701 0.514 15 11 11 15 0.7333 0.7333 1.0000 D 4
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m2 0.701 0.514 11 15 11 15 0.7333 1.0000 0.7333 D -4
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m2 0.742 0.495 11 14 10 15 0.6667 0.9091 0.7143 D 1
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m5 0.742 0.495 14 11 10 15 0.6667 0.7143 0.9091 D -1
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m4 0.754 0.467 13 21 13 21 0.6190 1.0000 0.6190 R -3
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m4 0.754 0.467 21 13 13 21 0.6190 0.6190 1.0000 R 5 
 Host name	rsat
 Job started	2025-12-19.083048
 Job done	2025-12-19.083055
 Seconds	0.37
	user	0.37
	system	0.24
	cuser	5.91
;	csystem	0.99