RSAT - peak-motifs result

Analysis: 0th_first_ZBTB_no_control (19/12/2025 08:31)

peak-motifs  -v 1 -title 0th_first_ZBTB_no_control -i $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: cccaggacctggg (sig=15.58; e-value=2.6e-16) RC: cccaggtcctggg oligos_6nt_mkv2_m2 assembly: ccccgccccg (sig=9.44; e-value=3.6e-10) RC: cggggcgggg oligos_6nt_mkv2_m3 assembly: gccgccccgccgc (sig=9.44; e-value=3.6e-10) RC: gcggcggggcggc oligos_6nt_mkv2_m4 assembly: cccgcgccgccccgccg (sig=9.44; e-value=3.6e-10) RC: cggcggggcggcgcggg oligos_6nt_mkv2_m5 assembly: ccttcct (sig=2.62; e-value=0.0024) RC: aggaagg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: ctgccaggacctgg (sig=18.49; e-value=3.2e-19) RC: ccaggtcctggcag oligos_7nt_mkv2_m2 assembly: gccccgccccg (sig=10.84; e-value=1.4e-11) RC: cggggcggggc oligos_7nt_mkv2_m3 assembly: ttattatta (sig=7.45; e-value=3.5e-08) RC: taataataa oligos_7nt_mkv2_m4 assembly: ggcggcggc (sig=4.34; e-value=4.6e-05) RC: gccgccgcc oligos_7nt_mkv2_m5 assembly: cgcccgc (sig=3.89; e-value=0.00013) RC: gcgggcg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=15.58; evalue=2.6e-16 syscCAGGACCTGggrs SYCCCAGGTCCTGGSRS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 53 (53.00%) Max nb of predicted sites per peak: 27  (chr8:1286541-1288097) Mean nb of predicted sites per peak: 2.45	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=9.44; evalue=3.6e-10 ssCCCCGCCCCgss SSCGGGGCGGGGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 30 (30.00%) Max nb of predicted sites per peak: 62  (chr17:63556337-63558493) Mean nb of predicted sites per peak: 7.03	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=9.44; evalue=3.6e-10 sssCcgCCCCGCCsCss SSGSGGCGGGGCGGSSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 27 (27.00%) Max nb of predicted sites per peak: 119  (chr17:63556337-63558493) Mean nb of predicted sites per peak: 12.52	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=9.44; evalue=3.6e-10 ssccCgCsCCGCCcCGCCsss SSSGGCGGGGCGGSGCGGGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 27 (27.00%) Max nb of predicted sites per peak: 234  (chr17:63556337-63558493) Mean nb of predicted sites per peak: 22.89	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=2.62; evalue=0.0024 ybCCTTCCtks SMAGGAAGGVR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 27 (27.00%) Max nb of predicted sites per peak: 3  (chr7:99716258-99717734) Mean nb of predicted sites per peak: 1.30	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=18.49; evalue=3.2e-19 mbctkcCAGGACCTGgsa TSCCAGGTCCTGGMAGVK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 62 (62.00%) Max nb of predicted sites per peak: 28  (chr8:1286541-1288097) Mean nb of predicted sites per peak: 2.37	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=10.84; evalue=1.4e-11 ssgCCCCGCCCCgss SSCGGGGCGGGGCSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 29 (29.00%) Max nb of predicted sites per peak: 75  (chr17:63556337-63558493) Mean nb of predicted sites per peak: 8.38	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=7.45; evalue=3.5e-08 twTtATTATTAww WWTAATAATAAWA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 37 (37.00%) Max nb of predicted sites per peak: 9  (chr3:168867249-168867674) Mean nb of predicted sites per peak: 2.35	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=4.34; evalue=4.6e-05 sssGCGGCGGCss SSGCCGCCGCSSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 25 (25.00%) Max nb of predicted sites per peak: 51  (chr17:63556337-63558493) Mean nb of predicted sites per peak: 7.48	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=3.89; evalue=0.00013 ssCGCCCGCss SSGCGGGCGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 28 (28.00%) Max nb of predicted sites per peak: 26  (chr17:63556337-63558493) Mean nb of predicted sites per peak: 3.75	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title 0th_first_ZBTB_no_control -i $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB

Warning: Not a single pattern was found in file tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083021_2025-12-19.083021_rq17AB/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab