; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083102_2025-12-19.083102_qAKBSN/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083102_2025-12-19.083102_qAKBSN/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083102_2025-12-19.083102_qAKBSN/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083102_2025-12-19.083102_qAKBSN/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083102_2025-12-19.083102_qAKBSN/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	3	4	2	3	11	10	3	11	11	1	3	1	13	11	14	2	3	10	4	2	12	11	5	7
c	1	2	0	0	0	2	3	1	2	0	1	1	1	1	1	1	1	0	0	3	1	3	5	5
g	5	5	3	1	3	0	0	1	1	1	1	1	1	1	0	2	1	3	2	0	0	0	2	1
t	7	5	11	12	2	4	10	3	2	14	11	13	1	3	1	11	11	3	10	11	3	2	4	3
//
; Sites	16
>site_0
TATTATTAATTCTTATTATTACCA
>site_1
TGGTAATAATAAGAATTAATAATA
>site_2
TTTAATTAGATTAAATAATTTACA
>site_3
TGTAAATTATTTAATCTAATTAAA
>site_4
GGTTTACACTCGAACTTATTAAGA
>site_5
TCTTAATAAGTTCGAGTGTAAACC
>site_6
GTTTAATTATTTAAAAGGTCAAAC
>site_7
GTTTGACCTTTTAAATAATTAAAC
>site_8
GATGACAAATTTAAATTTACAACT
>site_9
AGTTGTAAATTTAAATTTGTCATC
>site_10
TCTTACTGATATAAATTGTAACAT
>site_11
ATGTTACAATTTATATCAGTAAGA
>site_12
TGTTATATTTTTAAATTATTACTG
>site_13
CAGTAATAATTTAAAAATATAACA
>site_14
GTAAGATACTGTATATTATTATTT
>site_15
AAATAATAATATACAGTATCTTAC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083102_2025-12-19.083102_qAKBSN/results/oligos_6nt_test_vs_ctrl//peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083102_2025-12-19.083102_qAKBSN/results/oligos_6nt_test_vs_ctrl//peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices_logo_m1_rc.png
;
a	4	4	3	4	4	5	5	7	6	6	1	2	8	1	2	6	6	8	2	2	3	5	2	1
c	1	1	0	2	0	1	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	2	3
g	3	1	4	0	1	2	1	0	0	0	0	0	0	0	0	0	1	0	0	1	1	2	3	1
t	0	2	1	2	3	0	1	1	2	2	7	6	0	7	6	2	0	0	5	4	4	0	1	3
//
; Sites	8
>site_0
GAGATAGAAATTATAAAATGTGGC
>site_1
AAGCTAATTATTATTAGAATAACT
>site_2
CCAAAAAAAATTATATAAATGAAA
>site_3
GTGTTGTAAATTATTTAATCTAAT
>site_4
GGGAACCAAATAATTAAATTAGTC
>site_5
ATTTAAAATTATATTACATATAGT
>site_6
AAACGGAAATTTATTAAACTTCCC
>site_7
AAAAAAAAAATAAATAAATAAAGG
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083102_2025-12-19.083102_qAKBSN/results/oligos_6nt_test_vs_ctrl//peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083102_2025-12-19.083102_qAKBSN/results/oligos_6nt_test_vs_ctrl//peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices_logo_m2_rc.png
;
a	2	3	0	4	5	3	7	14	15	4	15	13	2	2	0	19	17	18	15	6	12	4	6	10
c	7	3	15	2	2	3	2	2	1	0	0	2	0	0	2	1	2	2	2	2	1	4	4	3
g	3	6	3	1	1	2	2	1	2	2	1	2	0	2	0	0	0	0	2	12	3	3	1	3
t	8	8	2	13	12	12	9	3	2	14	4	3	18	16	18	0	1	0	1	0	4	9	9	4
//
; Sites	20
>site_0
CGGTTTACAAGATTTAAAAAATCA
>site_1
GTCTTTATTTTATTTAAAAGAGCC
>site_2
ATCAAAAGATAATTTAACAGATTA
>site_3
CTCTACTAAAAATTCAAAAATTAG
>site_4
CTCTACTAAAAATTTAAATATTAG
>site_5
TGCCTTAAAGAGTTTAAAAGGCAA
>site_6
TAGATTAAATAATTTACAACACTT
>site_7
GTCATTTAATATTTTCAACAATCC
>site_8
TTCTTTCCGTACTTCAAAACATAT
>site_9
CACTTGCTGTAATGTAAAAGAGTA
>site_10
GCCTCTGAATTCTTTACAAGATTA
>site_11
CGCTTTAAAGAGTTTAAAAGGCAA
>site_12
TGTTGCTAATAATTTAAAGATCGG
>site_13
ACCTTTTAAATAATTAAACGCAAA
>site_14
TGCGTTTAATTATTTAAAAGGTCA
>site_15
TACCAGTAATAATTTAAAAATATA
>site_16
TGCTATGACTATTATAAAAGAATA
>site_17
CTTTTATATTATTTTATCAGATTC
>site_18
CTGATAAAATAATATAAAAGAGTT
>site_19
TCCTCTTTATAAAGTAAAGGAATT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083102_2025-12-19.083102_qAKBSN/results/oligos_6nt_test_vs_ctrl//peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083102_2025-12-19.083102_qAKBSN/results/oligos_6nt_test_vs_ctrl//peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices_logo_m3_rc.png
;
a	43	45	25	109	167	6	8	17	4	4	11	20	48	71
c	57	47	55	53	5	4	6	5	173	175	10	9	24	63
g	33	62	27	11	7	169	165	2	5	2	1	139	79	20
t	50	29	76	10	4	4	4	159	1	2	161	15	32	29
//
; Sites	183
>site_0
ACACAGGTCCTGCA
>site_1
TGCAAGGTCCTGGC
>site_2
CCTTAGGTCCTGGC
>site_3
GACAAGATCCTGGC
>site_4
CCGGAGGTCCTGGC
>site_5
GATAAGATCCTGGC
>site_6
GGCCAGGTCCTGGC
>site_7
AAATAGGTCCTATT
>site_8
AAGCAGGTCCTGGT
>site_9
CTTAAGTTCCAGTG
>site_10
AAGCAGGTCCTGTC
>site_11
TCACAGGTCCTGAC
>site_12
TGTCAGGACCTGTG
>site_13
TGGCAGGTCCTGGC
>site_14
TGGAAGCTCCTGCG
>site_15
CGCAAGGTCCAAAA
>site_16
CGTAAGCTCCCGAG
>site_17
GAGCAGGTCCTGGC
>site_18
TTGAAGGTCCTGGC
>site_19
TGAAAGGTCTTGTG
>site_20
TGCAAAGTCCTGGG
>site_21
CCAGAGGTCCTGGC
>site_22
TCTCAGGTCCTGAT
>site_23
AAAAAGGTCCTAAA
>site_24
TTTAAGGACCCGGA
>site_25
ACACAGGTCCTAGA
>site_26
AATAACGACCTGCC
>site_27
GTATAGGTCCTTGT
>site_28
AACAAGGACCTATA
>site_29
AGCAAGATCCTGTC
>site_30
TCTAGGGTCCTGGA
>site_31
TACAAGGTCCTAAA
>site_32
ATTAAGGTGCTCAG
>site_33
TCCCAGGTCCTGAC
>site_34
TGCAATGTCCTGGT
>site_35
GGAAATGTCCTGGC
>site_36
TTTCAGGTCCAGAC
>site_37
CCCAAGGTCCTAGA
>site_38
ATCAAGGTCCTACT
>site_39
CCTAAGGTACAGAC
>site_40
CATAAGGTCCTGGA
>site_41
CATAAGGTCCTCGA
>site_42
CATAAGGTCCTGGA
>site_43
CATAAGGTCCTGGA
>site_44
CATAAGGTCCTGGA
>site_45
TATTACGTCCTATT
>site_46
CATAAGGTCCTGGA
>site_47
AATAAGGTCCTGGA
>site_48
AATCAGGTCCTGGA
>site_49
CATAAGGTGCTGGA
>site_50
CATAAGGTCTTGGA
>site_51
CATAAGGTCCTGGA
>site_52
CGTAAGGTCCTGGA
>site_53
CATAAGGTCCTCAA
>site_54
CATAAGGTCCTGGA
>site_55
CATAAGGTCCTCGA
>site_56
CATAAGGTCCTGGA
>site_57
CGTATGCTCCTGAT
>site_58
CATACGGTCCCATA
>site_59
TCCCAGGTCCTGAC
>site_60
TGCCAGGTCCTGAC
>site_61
CGTCAGGACCTGGC
>site_62
TGCCAGGTCCTGAC
>site_63
CGTCAGGACCTGGC
>site_64
TGCCAGGTCCTGAC
>site_65
CGTCAGGACCTGGC
>site_66
TGCCAGGTCCTGAC
>site_67
CGTCAGGACCTGGC
>site_68
TGCCAGGTCCTGAC
>site_69
TGCCAGGTCCTGAC
>site_70
TGCCAGGTCCTGAT
>site_71
TCACACGTCCTGAC
>site_72
TCCAGGGTCCTGAC
>site_73
GTGAAGCTCCTGTT
>site_74
AATCAGGTCCTAGA
>site_75
ACCAAGTTCCTGGC
>site_76
AGGCAGGTCCTGGC
>site_77
TGTAAGATCCTGTC
>site_78
TGTAAGGTCCTGTA
>site_79
CCGCAGGTCCTTGA
>site_80
TTCAAGGACCTGCG
>site_81
GAGAAGGTCCTTGA
>site_82
ACAAAGGTACTAAT
>site_83
TTGAAGGTCGTGTC
>site_84
ATCAAGGTCCAGAA
>site_85
ACGCAGGTCCTGTT
>site_86
CGCACGGTCCTGAA
>site_87
CCGAAGGCCCTGCT
>site_88
GATAAGGTCCTGGC
>site_89
TCACAGGTCCTGGA
>site_90
CAGAAGATCCTGTA
>site_91
GGCTAGGTCCTGGC
>site_92
CCTGAGGTCCTTCA
>site_93
GGGAAGGTCCGGGA
>site_94
CGTGTGGTCCTGGG
>site_95
ATCAAGGTCCTTCC
>site_96
GCAAAGGCCCTGAC
>site_97
CAAAAGGTCGCGAC
>site_98
ATCCAGGTCCTGTT
>site_99
GATAAAGTCCTAGG
>site_100
CAGAAGGACCTGGG
>site_101
GTCAGGGTCCTGGC
>site_102
CTCCAGGTCCTGGA
>site_103
CTATAGGTCCAGAT
>site_104
TGTACGGTACTGAA
>site_105
TTCCAGGTCCTACT
>site_106
TGTAAAGTCCTTTT
>site_107
CCTAAGGTCCCCAA
>site_108
CAGAATGTCCTGAA
>site_109
TCCAAAGTCCTGGT
>site_110
CATAAAGTCCTGAG
>site_111
TTTAAGGTCCTCCT
>site_112
ACCCAGGTCCTGTT
>site_113
TGCCAGGTCCTGGC
>site_114
TTGAAGGTCCTTAC
>site_115
TGTAAGGACCTTCA
>site_116
AATCACGTCCTGCA
>site_117
ACTGAGGTCCAGAT
>site_118
TGCAAGGTCCTAAA
>site_119
TGTAAGATCCTGTC
>site_120
TGTAAAGTCCTGTA
>site_121
GATAAGGTCCACTG
>site_122
CTCCAGGTCCTGAA
>site_123
ACTGAGTTCCTGAC
>site_124
ATAAAGGACCTTAC
>site_125
GGTAAGGTCCTTTA
>site_126
ACAAAGATCCTGGC
>site_127
TCCAAGGACCTGCC
>site_128
AATAAGGTCCTCGC
>site_129
GTCAAGGACCTGGT
>site_130
TATAATCTCCTGCC
>site_131
TGTCAGGTCCTAGA
>site_132
GCAAAGGACCTGGG
>site_133
GTCAGGGTCCTGGC
>site_134
CTCAAGGACCTGAA
>site_135
TTTCAGGTCCTTGA
>site_136
TGTAAGTTCCTGGC
>site_137
GCTAGGGTCCCGGA
>site_138
GGGAAGGTCCCGGT
>site_139
AGACAGGTCCTGGC
>site_140
AGTGAGGTCCTGCT
>site_141
AGGCAGGTCCTGAA
>site_142
CGCCCGGTCCTGCG
>site_143
CGCAAGGGCCCGCG
>site_144
GCGAGGGTCCTTAA
>site_145
GCTAAGGTCCTGGC
>site_146
CGTAAGGCCATGTG
>site_147
AGTGTGGTCCTGGT
>site_148
ATAAAGGACCTATC
>site_149
AGATAGGTCCTTTA
>site_150
GTAAAGGCCCTGAA
>site_151
GCCAAGGTCCTGCA
>site_152
GCCAAGGTCCTGAA
>site_153
AAGCAGGTCCTATT
>site_154
TACAAGGTTCTGCA
>site_155
CCCCAGGTCCTGCT
>site_156
CACTAGGTCCTGAA
>site_157
GATGAGGTCATGTG
>site_158
GGGAAGGTCATGGA
>site_159
GGCAAGCTCCTGCA
>site_160
TCTCAGGTCCAGCT
>site_161
GCTAAGGTCCCAAC
>site_162
AGCTAGGTCCTTTA
>site_163
AGCCAGGTCCTGCA
>site_164
CGTAAGGTGATGGA
>site_165
AGTAAGATACTGTA
>site_166
ATTGAGGTGCTGAC
>site_167
AGGCAGGTCCTGGC
>site_168
CGTTAGGTGCTGAA
>site_169
GGTGAGGTCCAGGC
>site_170
CCCCAGGTCCTGGA
>site_171
CCCCAGGTCCTGGA
>site_172
CCCCAGGTCCTGGA
>site_173
AGGAAGGCCCTGGT
>site_174
TAGAAGGGCCTACG
>site_175
CCAACGGTCCTCAC
>site_176
CCCAAGGTCCTGGC
>site_177
CCTATGGTCCTTTC
>site_178
CTTCGGGTCCTGGA
>site_179
AGCAAGGTCCAGGG
>site_180
GCACAGGTCCCGTC
>site_181
GCTAAGGTCCTGTA
>site_182
ACAAAGGTCCTGGA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083102_2025-12-19.083102_qAKBSN/results/oligos_6nt_test_vs_ctrl//peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083102_2025-12-19.083102_qAKBSN/results/oligos_6nt_test_vs_ctrl//peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices_logo_m4_rc.png
;
a	23	26	6	88	88	85	2	5	5	9	29	23
c	18	25	80	7	3	3	1	3	7	74	29	22
g	22	19	6	0	3	3	87	4	7	6	8	24
t	32	25	3	0	1	4	5	83	76	6	29	26
//
; Sites	95
>site_0
AACAAAGTTTTA
>site_1
AGGAAAGTTCCC
>site_2
CCCAAAGTCCCA
>site_3
GGCAAAGTGCCC
>site_4
TCCAAATTTCTA
>site_5
AGCAAAGTTTAC
>site_6
CTGAAAGTTCAA
>site_7
TTCCAAGTTCAG
>site_8
GACAAAGCTCCA
>site_9
GTCAAAGCTCTC
>site_10
CTCAAAGTTAAA
>site_11
TTCAAAGTTTCT
>site_12
ACCAACGTTGAT
>site_13
ATCAACGTTGGT
>site_14
GCCAAAGTCCTA
>site_15
TTCAAATTTCCG
>site_16
TGCAAGGTTCGC
>site_17
TGCAAAGTCCTG
>site_18
TCCAAAGTTCTG
>site_19
GTCAAAGTTAAC
>site_20
CCCAAAGTGCTG
>site_21
GTCAAAGTGCTG
>site_22
GACAAAGGTCTT
>site_23
TTCAAATTTCAT
>site_24
GTCCAAGTTCAC
>site_25
ACCAAAATTCTT
>site_26
CCCAAAGTGCTG
>site_27
GACAAAGTTGTT
>site_28
GACAAAGTTGTT
>site_29
TACCAAGTTCCT
>site_30
CAAAAAGTTCAG
>site_31
AACATAGTTAAT
>site_32
TACAAAGTATGT
>site_33
CCAAAAGTTCCC
>site_34
ATGAAAGTTCAA
>site_35
TGCAAAGTACTC
>site_36
TGGAAAGTTCGT
>site_37
ATAAAAGTTAAT
>site_38
GTCACAGTTCTG
>site_39
CTCAAAGTTCCA
>site_40
TCAAAAGTTCAA
>site_41
TATAAAGTTAGG
>site_42
GGCAAAGATCAG
>site_43
GAGAAAGTTCTG
>site_44
GCCAATGTTACG
>site_45
CAAAAAGTTCTA
>site_46
CATAAAGTTAGT
>site_47
ACCAATGTTCCA
>site_48
GCCCAAGTTCCC
>site_49
TGCCAAGTTCAA
>site_50
GTCCAAGTTCCC
>site_51
AGCAAAGTTGCT
>site_52
CCCAAAGGTCTC
>site_53
TCCAAAGTCCCC
>site_54
TCCAAAGTTCTG
>site_55
GACAAAATTCCC
>site_56
TTCAAAGTCCTT
>site_57
TCCAAAGTCCTG
>site_58
ATCAAAGTTCTC
>site_59
ACCAAAGTACAT
>site_60
CACAGAGTTCAA
>site_61
ACCAAAGTTCGT
>site_62
TTCAAAGGTCTC
>site_63
TACAAAGTATGT
>site_64
TACAAAGATCCT
>site_65
AACAAAGATCAT
>site_66
AACAAAGTTAAA
>site_67
GCCCAAGTTCTG
>site_68
GTCAAAGTACAG
>site_69
TCCAAAGTGCAA
>site_70
TGCAAAGCTCAC
>site_71
TGCAAAGTGCTA
>site_72
CTCACAGTTCTG
>site_73
AACAAAGATCCA
>site_74
TACAAGGTTCTG
>site_75
CTCACAGTTCCA
>site_76
AGCAATGTTCCC
>site_77
AACAGAGTTCAA
>site_78
TGCAAAGATCAC
>site_79
CACAAAGTTCAG
>site_80
GACAAAGTTTAC
>site_81
TGCAAAGTTCCA
>site_82
AGCAATGTTCCA
>site_83
TGCAAAGTTGAG
>site_84
CCCAAATTTCTC
>site_85
CCTAACGTTCCG
>site_86
CCCAAAGTGCTG
>site_87
GTCAGAGTTACG
>site_88
ATCAAGGTTCCT
>site_89
TGCAAAGTCCCT
>site_90
TCCAAATTTCAC
>site_91
TGGAAAGTTCCA
>site_92
GTAAAAGTTCAT
>site_93
AACAAACTTCCT
>site_94
AACAAAGGTCCT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083102_2025-12-19.083102_qAKBSN/results/oligos_6nt_test_vs_ctrl//peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083102_2025-12-19.083102_qAKBSN/results/oligos_6nt_test_vs_ctrl//peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices_logo_m5_rc.png
;
; Host name	rsat
; Job started	2025-12-19.083147
; Job done	2025-12-19.083148
; Seconds	0.12
;	user	0.12
;	system	0.07
;	cuser	1.38
;	csystem	0.2
