# One-to-n alignments

    Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083102_2025-12-19.083102_qAKBSN/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083102_2025-12-19.083102_qAKBSN/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

## One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m1_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=24; shift=0; ncol=24; kdTTAwtAATTTAAATTawTAAhm
    ; Alignment reference
    a	3	4	2	3	11	10	3	11	11	1	3	1	13	11	14	2	3	10	4	2	12	11	5	7
    c	1	2	0	0	0	2	3	1	2	0	1	1	1	1	1	1	1	0	0	3	1	3	5	5
    g	5	5	3	1	3	0	0	1	1	1	1	1	1	1	0	2	1	3	2	0	0	0	2	1
    t	7	5	11	12	2	4	10	3	2	14	11	13	1	3	1	11	11	3	10	11	3	2	4	3
oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/2; ncol2=24; w=0; offset=0; strand=D; shift=0; score=      1; kdTTAwtAATTTAAATTawTAAhm
    ; cor=; Ncor=
    a	3	4	2	3	11	10	3	11	11	1	3	1	13	11	14	2	3	10	4	2	12	11	5	7
    c	1	2	0	0	0	2	3	1	2	0	1	1	1	1	1	1	1	0	0	3	1	3	5	5
    g	5	5	3	1	3	0	0	1	1	1	1	1	1	1	0	2	1	3	2	0	0	0	2	1
    t	7	5	11	12	2	4	10	3	2	14	11	13	1	3	1	11	11	3	10	11	3	2	4	3
oligos_6nt_test_vs_ctrl_m3_rc_shift3 (oligos_6nt_test_vs_ctrl_m3_rc) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3_rc; m=2/2; ncol2=24; w=0; offset=3; strand=R; shift=3; score=0.616938; ---twatyTTTTAAAtTATTwawa
    ; cor=; Ncor=
    a	0	0	0	4	9	9	4	0	1	0	1	0	18	16	18	3	4	14	2	3	9	12	12	13
    c	0	0	0	3	1	3	3	12	2	0	0	0	0	2	0	2	1	2	2	1	2	2	1	1
    g	0	0	0	3	4	4	1	2	2	2	2	1	2	0	0	2	0	0	1	2	2	3	2	2
    t	0	0	0	10	6	4	12	6	15	18	17	19	0	2	2	13	15	4	15	14	7	3	5	4

## One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m2_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=24; shift=0; ncol=24; rwrhwraAWWTWATWWAAwwwrvy
    ; Alignment reference
    a	4	4	3	4	4	5	5	7	6	6	1	2	8	1	2	6	6	8	2	2	3	5	2	1
    c	1	1	0	2	0	1	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	2	3
    g	3	1	4	0	1	2	1	0	0	0	0	0	0	0	0	0	1	0	0	1	1	2	3	1
    t	0	2	1	2	3	0	1	1	2	2	7	6	0	7	6	2	0	0	5	4	4	0	1	3
oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/2; ncol2=24; w=0; offset=0; strand=D; shift=0; score=      1; rwrhwraAWWTWATWWAAwwwrvy
    ; cor=; Ncor=
    a	4	4	3	4	4	5	5	7	6	6	1	2	8	1	2	6	6	8	2	2	3	5	2	1
    c	1	1	0	2	0	1	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	2	3
    g	3	1	4	0	1	2	1	0	0	0	0	0	0	0	0	0	1	0	0	1	1	2	3	1
    t	0	2	1	2	3	0	1	1	2	2	7	6	0	7	6	2	0	0	5	4	4	0	1	3
oligos_7nt_test_vs_ctrl_m2_rc_shift3 (oligos_7nt_test_vs_ctrl_m2_rc) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2_rc; m=2/2; ncol2=14; w=0; offset=3; strand=R; shift=3; score=0.421614; ---awaaTAATAATwaw-------
    ; cor=; Ncor=
    a	0	0	0	52	48	84	88	17	121	116	12	119	119	10	34	56	49	0	0	0	0	0	0	0
    c	0	0	0	24	25	10	11	7	2	3	5	3	0	9	7	23	29	0	0	0	0	0	0	0
    g	0	0	0	25	18	22	13	2	4	6	2	5	7	4	19	22	21	0	0	0	0	0	0	0
    t	0	0	0	33	43	18	22	108	7	9	115	7	8	111	74	33	35	0	0	0	0	0	0	0

## One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m2_shift7 ; 3 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_7nt_test_vs_ctrl_m2_shift7 (oligos_7nt_test_vs_ctrl_m2) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=14; shift=7; ncol=21; -------wtwATTATTAttwt
    ; Alignment reference
    a	0	0	0	0	0	0	0	35	33	74	111	8	7	115	9	7	108	22	18	43	33
    c	0	0	0	0	0	0	0	21	22	19	4	7	5	2	6	4	2	13	22	18	25
    g	0	0	0	0	0	0	0	29	23	7	9	0	3	5	3	2	7	11	10	25	24
    t	0	0	0	0	0	0	0	49	56	34	10	119	119	12	116	121	17	88	84	48	52
oligos_7nt_test_vs_ctrl_m2_shift7 (oligos_7nt_test_vs_ctrl_m2) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/2; ncol2=14; w=0; offset=0; strand=D; shift=7; score=      1; -------wtwATTATTAttwt
    ; cor=; Ncor=
    a	0	0	0	0	0	0	0	35	33	74	111	8	7	115	9	7	108	22	18	43	33
    c	0	0	0	0	0	0	0	21	22	19	4	7	5	2	6	4	2	13	22	18	25
    g	0	0	0	0	0	0	0	29	23	7	9	0	3	5	3	2	7	11	10	25	24
    t	0	0	0	0	0	0	0	49	56	34	10	119	119	12	116	121	17	88	84	48	52
oligos_6nt_test_vs_ctrl_m2_rc_shift0 (oligos_6nt_test_vs_ctrl_m2_rc) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2_rc; m=2/2; ncol2=24; w=-7; offset=-7; strand=R; shift=0; score=0.421614; rbywwwTTWWATWAWWTtywd
    ; cor=; Ncor=
    a	3	1	0	4	4	5	0	0	2	6	7	0	6	7	2	2	1	1	0	3	2
    c	1	3	2	1	1	0	0	1	0	0	0	0	0	0	0	0	0	1	2	1	0
    g	3	2	1	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	2
    t	1	2	5	3	2	2	8	6	6	2	1	8	2	1	6	6	7	5	5	4	4

## One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m3_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=24; shift=0; ncol=24; wkaTtTtwAwATTTAaAaATtyth
    ; Alignment reference
    a	6	3	10	2	3	2	4	5	17	9	13	2	2	2	15	10	14	10	15	2	0	4	4	5
    c	1	4	4	1	2	0	3	1	0	1	1	0	0	0	0	2	1	3	1	1	3	5	4	6
    g	3	5	0	2	1	2	1	0	0	2	2	1	2	2	0	3	1	0	0	1	3	2	4	1
    t	7	5	3	12	11	13	9	11	0	5	1	14	13	13	2	2	1	4	1	13	11	6	5	5
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/2; ncol2=24; w=0; offset=0; strand=D; shift=0; score=      1; wkaTtTtwAwATTTAaAaATtyth
    ; cor=; Ncor=
    a	6	3	10	2	3	2	4	5	17	9	13	2	2	2	15	10	14	10	15	2	0	4	4	5
    c	1	4	4	1	2	0	3	1	0	1	1	0	0	0	0	2	1	3	1	1	3	5	4	6
    g	3	5	0	2	1	2	1	0	0	2	2	1	2	2	0	3	1	0	0	1	3	2	4	1
    t	7	5	3	12	11	13	9	11	0	5	1	14	13	13	2	2	1	4	1	13	11	6	5	5
oligos_7nt_test_vs_ctrl_m4_rc_shift2 (oligos_7nt_test_vs_ctrl_m4_rc) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4_rc; m=2/2; ncol2=22; w=0; offset=2; strand=R; shift=2; score=0.678884; --ktyTtTaTTTTTAaAaawTywy
    ; cor=; Ncor=
    a	0	0	2	2	3	1	3	0	11	1	1	2	1	0	12	11	15	10	10	5	0	2	7	4
    c	0	0	4	3	8	1	0	1	2	1	0	0	1	1	0	1	1	4	2	1	3	8	2	5
    g	0	0	5	4	1	0	3	0	1	1	1	2	1	0	1	3	1	0	2	1	0	2	3	3
    t	0	0	6	8	5	15	11	16	3	14	15	13	14	16	4	2	0	3	3	10	14	5	5	5

## One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m4_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=22; shift=0; ncol=22; rwrAwttTtTAAAAAtAaAram
    ; Alignment reference
    a	5	5	5	14	10	3	3	0	2	4	16	14	13	15	14	3	16	11	15	5	8	6
    c	3	3	2	0	1	2	0	1	3	1	0	1	2	1	1	1	0	3	0	1	4	5
    g	5	2	8	3	1	2	4	1	1	0	1	1	0	0	1	2	1	0	1	8	3	4
    t	4	7	2	0	5	10	10	15	11	12	0	1	2	1	1	11	0	3	1	3	2	2
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/2; ncol2=22; w=0; offset=0; strand=D; shift=0; score=      1; rwrAwttTtTAAAAAtAaAram
    ; cor=; Ncor=
    a	5	5	5	14	10	3	3	0	2	4	16	14	13	15	14	3	16	11	15	5	8	6
    c	3	3	2	0	1	2	0	1	3	1	0	1	2	1	1	1	0	3	0	1	4	5
    g	5	2	8	3	1	2	4	1	1	0	1	1	0	0	1	2	1	0	1	8	3	4
    t	4	7	2	0	5	10	10	15	11	12	0	1	2	1	1	11	0	3	1	3	2	2
oligos_7nt_test_vs_ctrl_m3_rc_shift0 (oligos_7nt_test_vs_ctrl_m3_rc) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3_rc; m=2/2; ncol2=24; w=0; offset=0; strand=R; shift=0; score=0.678884; daraATtTtTAAATwTwaAaAt
    ; cor=; Ncor=
    a	5	5	6	11	13	1	4	1	2	2	13	13	14	1	5	0	11	9	13	11	12	3
    c	1	4	2	3	1	0	0	1	3	0	2	2	1	2	2	0	0	1	2	1	2	0
    g	6	4	5	3	1	1	3	1	2	0	0	0	0	1	1	0	1	3	0	2	1	4
    t	5	4	4	0	2	15	10	14	10	15	2	2	2	13	9	17	5	4	2	3	2	10

## One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m1_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=14; shift=0; ncol=14; kymAGGACCTGgsr
    ; Alignment reference
    a	52	35	60	223	4	3	174	4	3	2	11	47	59	92
    c	35	88	120	2	3	3	7	223	222	16	11	32	73	35
    g	88	48	29	10	230	229	9	7	5	4	180	131	65	63
    t	62	66	28	2	0	2	47	3	7	215	35	27	40	47
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/2; ncol2=14; w=0; offset=0; strand=D; shift=0; score=      1; kymAGGACCTGgsr
    ; cor=; Ncor=
    a	52	35	60	223	4	3	174	4	3	2	11	47	59	92
    c	35	88	120	2	3	3	7	223	222	16	11	32	73	35
    g	88	48	29	10	230	229	9	7	5	4	180	131	65	63
    t	62	66	28	2	0	2	47	3	7	215	35	27	40	47
oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4_rc; m=2/2; ncol2=14; w=0; offset=0; strand=R; shift=0; score=0.923919; kyCAGGACCTkrsr
    ; cor=; Ncor=
    a	29	32	15	161	2	1	159	4	4	4	10	76	29	50
    c	20	79	139	1	2	5	2	165	169	7	11	27	62	33
    g	63	24	9	10	175	173	5	6	4	5	53	55	47	57
    t	71	48	20	11	4	4	17	8	6	167	109	25	45	43

## One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m4_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=14; shift=0; ncol=14; ysymAGGTCCTGrm
    ; Alignment reference
    a	43	45	25	109	167	6	8	17	4	4	11	20	48	71
    c	57	47	55	53	5	4	6	5	173	175	10	9	24	63
    g	33	62	27	11	7	169	165	2	5	2	1	139	79	20
    t	50	29	76	10	4	4	4	159	1	2	161	15	32	29
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/2; ncol2=14; w=0; offset=0; strand=D; shift=0; score=      1; ysymAGGTCCTGrm
    ; cor=; Ncor=
    a	43	45	25	109	167	6	8	17	4	4	11	20	48	71
    c	57	47	55	53	5	4	6	5	173	175	10	9	24	63
    g	33	62	27	11	7	169	165	2	5	2	1	139	79	20
    t	50	29	76	10	4	4	4	159	1	2	161	15	32	29
oligos_7nt_test_vs_ctrl_m1_rc_shift0 (oligos_7nt_test_vs_ctrl_m1_rc) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1_rc; m=2/2; ncol2=14; w=0; offset=0; strand=R; shift=0; score=0.923919; yscCAGGTCCTkrm
    ; cor=; Ncor=
    a	47	40	27	35	215	7	3	47	2	0	2	28	66	62
    c	63	65	131	180	4	5	7	9	229	230	10	29	48	88
    g	35	73	32	11	16	222	223	7	3	3	2	120	88	35
    t	92	59	47	11	2	3	4	174	3	4	223	60	35	52

## One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m3_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=24; shift=0; ncol=24; ykCtwtwAATAaTTTAAAAratwa
    ; Alignment reference
    a	2	3	0	4	5	3	7	14	15	4	15	13	2	2	0	19	17	18	15	6	12	4	6	10
    c	7	3	15	2	2	3	2	2	1	0	0	2	0	0	2	1	2	2	2	2	1	4	4	3
    g	3	6	3	1	1	2	2	1	2	2	1	2	0	2	0	0	0	0	2	12	3	3	1	3
    t	8	8	2	13	12	12	9	3	2	14	4	3	18	16	18	0	1	0	1	0	4	9	9	4
oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/2; ncol2=24; w=0; offset=0; strand=D; shift=0; score=      1; ykCtwtwAATAaTTTAAAAratwa
    ; cor=; Ncor=
    a	2	3	0	4	5	3	7	14	15	4	15	13	2	2	0	19	17	18	15	6	12	4	6	10
    c	7	3	15	2	2	3	2	2	1	0	0	2	0	0	2	1	2	2	2	2	1	4	4	3
    g	3	6	3	1	1	2	2	1	2	2	1	2	0	2	0	0	0	0	2	12	3	3	1	3
    t	8	8	2	13	12	12	9	3	2	14	4	3	18	16	18	0	1	0	1	0	4	9	9	4
oligos_6nt_test_vs_ctrl_m1_shift3 (oligos_6nt_test_vs_ctrl_m1) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1; m=2/2; ncol2=24; w=0; offset=3; strand=D; shift=3; score=0.616938; ---kdTTAwtAATTTAAATTawTA
    ; cor=; Ncor=
    a	0	0	0	3	4	2	3	11	10	3	11	11	1	3	1	13	11	14	2	3	10	4	2	12
    c	0	0	0	1	2	0	0	0	2	3	1	2	0	1	1	1	1	1	1	1	0	0	3	1
    g	0	0	0	5	5	3	1	3	0	0	1	1	1	1	1	1	1	0	2	1	3	2	0	0
    t	0	0	0	7	5	11	12	2	4	10	3	2	14	11	13	1	3	1	11	11	3	10	11	3

## One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m5_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=12; shift=0; ncol=12; thCAAAGTTChk
    ; Alignment reference
    a	23	26	6	88	88	85	2	5	5	9	29	23
    c	18	25	80	7	3	3	1	3	7	74	29	22
    g	22	19	6	0	3	3	87	4	7	6	8	24
    t	32	25	3	0	1	4	5	83	76	6	29	26
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/2; ncol2=12; w=0; offset=0; strand=D; shift=0; score=      1; thCAAAGTTChk
    ; cor=; Ncor=
    a	23	26	6	88	88	85	2	5	5	9	29	23
    c	18	25	80	7	3	3	1	3	7	74	29	22
    g	22	19	6	0	3	3	87	4	7	6	8	24
    t	32	25	3	0	1	4	5	83	76	6	29	26
oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5_rc; m=2/2; ncol2=12; w=0; offset=0; strand=R; shift=0; score=0.70126; twTAAAGTTTkw
    ; cor=; Ncor=
    a	22	27	5	94	88	90	3	2	3	8	25	26
    c	19	24	4	1	3	4	4	7	4	5	22	22
    g	25	20	6	1	5	2	83	2	2	7	28	21
    t	35	30	86	5	5	5	11	90	92	81	26	32

## One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m5_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=12; shift=0; ncol=12; wmAAACTTTAwa
    ; Alignment reference
    a	32	26	81	92	90	11	5	5	5	86	30	35
    c	21	28	7	2	2	83	2	5	1	6	20	25
    g	22	22	5	4	7	4	4	3	1	4	24	19
    t	26	25	8	3	2	3	90	88	94	5	27	22
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/2; ncol2=12; w=0; offset=0; strand=D; shift=0; score=      1; wmAAACTTTAwa
    ; cor=; Ncor=
    a	32	26	81	92	90	11	5	5	5	86	30	35
    c	21	28	7	2	2	83	2	5	1	6	20	25
    g	22	22	5	4	7	4	4	3	1	4	24	19
    t	26	25	8	3	2	3	90	88	94	5	27	22
oligos_6nt_test_vs_ctrl_m5_rc_shift0 (oligos_6nt_test_vs_ctrl_m5_rc) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5_rc; m=2/2; ncol2=12; w=0; offset=0; strand=R; shift=0; score=0.70126; mdGAACTTTGda
    ; cor=; Ncor=
    a	26	29	6	76	83	5	4	1	0	3	25	32
    c	24	8	6	7	4	87	3	3	0	6	19	22
    g	22	29	74	7	3	1	3	3	7	80	25	18
    t	23	29	9	5	5	2	85	88	88	6	26	23