One-to-n alignments
Command: compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083102_2025-12-19.083102_qAKBSN/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.083102_2025-12-19.083102_qAKBSN/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m1_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1) |
 |
|
|
; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=24; shift=0; ncol=24; kdTTAwtAATTTAAATTawTAAhm
; Alignment reference
a 3 4 2 3 11 10 3 11 11 1 3 1 13 11 14 2 3 10 4 2 12 11 5 7
c 1 2 0 0 0 2 3 1 2 0 1 1 1 1 1 1 1 0 0 3 1 3 5 5
g 5 5 3 1 3 0 0 1 1 1 1 1 1 1 0 2 1 3 2 0 0 0 2 1
t 7 5 11 12 2 4 10 3 2 14 11 13 1 3 1 11 11 3 10 11 3 2 4 3
|
| oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1) |
|
|
|
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/2; ncol2=24; w=0; offset=0; strand=D; shift=0; score= 1; kdTTAwtAATTTAAATTawTAAhm
; cor=; Ncor=
a 3 4 2 3 11 10 3 11 11 1 3 1 13 11 14 2 3 10 4 2 12 11 5 7
c 1 2 0 0 0 2 3 1 2 0 1 1 1 1 1 1 1 0 0 3 1 3 5 5
g 5 5 3 1 3 0 0 1 1 1 1 1 1 1 0 2 1 3 2 0 0 0 2 1
t 7 5 11 12 2 4 10 3 2 14 11 13 1 3 1 11 11 3 10 11 3 2 4 3
|
| oligos_6nt_test_vs_ctrl_m3_rc_shift3 (oligos_6nt_test_vs_ctrl_m3_rc) |
 |
|
|
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3_rc; m=2/2; ncol2=24; w=0; offset=3; strand=R; shift=3; score=0.616938; ---twatyTTTTAAAtTATTwawa
; cor=; Ncor=
a 0 0 0 4 9 9 4 0 1 0 1 0 18 16 18 3 4 14 2 3 9 12 12 13
c 0 0 0 3 1 3 3 12 2 0 0 0 0 2 0 2 1 2 2 1 2 2 1 1
g 0 0 0 3 4 4 1 2 2 2 2 1 2 0 0 2 0 0 1 2 2 3 2 2
t 0 0 0 10 6 4 12 6 15 18 17 19 0 2 2 13 15 4 15 14 7 3 5 4
|
One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m2_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2) |
 |
|
|
; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=24; shift=0; ncol=24; rwrhwraAWWTWATWWAAwwwrvy
; Alignment reference
a 4 4 3 4 4 5 5 7 6 6 1 2 8 1 2 6 6 8 2 2 3 5 2 1
c 1 1 0 2 0 1 1 0 0 0 0 0 0 0 0 0 1 0 1 1 0 1 2 3
g 3 1 4 0 1 2 1 0 0 0 0 0 0 0 0 0 1 0 0 1 1 2 3 1
t 0 2 1 2 3 0 1 1 2 2 7 6 0 7 6 2 0 0 5 4 4 0 1 3
|
| oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2) |
|
|
|
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/2; ncol2=24; w=0; offset=0; strand=D; shift=0; score= 1; rwrhwraAWWTWATWWAAwwwrvy
; cor=; Ncor=
a 4 4 3 4 4 5 5 7 6 6 1 2 8 1 2 6 6 8 2 2 3 5 2 1
c 1 1 0 2 0 1 1 0 0 0 0 0 0 0 0 0 1 0 1 1 0 1 2 3
g 3 1 4 0 1 2 1 0 0 0 0 0 0 0 0 0 1 0 0 1 1 2 3 1
t 0 2 1 2 3 0 1 1 2 2 7 6 0 7 6 2 0 0 5 4 4 0 1 3
|
| oligos_7nt_test_vs_ctrl_m2_rc_shift3 (oligos_7nt_test_vs_ctrl_m2_rc) |
 |
|
|
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2_rc; m=2/2; ncol2=14; w=0; offset=3; strand=R; shift=3; score=0.421614; ---awaaTAATAATwaw-------
; cor=; Ncor=
a 0 0 0 52 48 84 88 17 121 116 12 119 119 10 34 56 49 0 0 0 0 0 0 0
c 0 0 0 24 25 10 11 7 2 3 5 3 0 9 7 23 29 0 0 0 0 0 0 0
g 0 0 0 25 18 22 13 2 4 6 2 5 7 4 19 22 21 0 0 0 0 0 0 0
t 0 0 0 33 43 18 22 108 7 9 115 7 8 111 74 33 35 0 0 0 0 0 0 0
|
One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m2_shift7 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_test_vs_ctrl_m2_shift7 (oligos_7nt_test_vs_ctrl_m2) |
 |
|
|
; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=14; shift=7; ncol=21; -------wtwATTATTAttwt
; Alignment reference
a 0 0 0 0 0 0 0 35 33 74 111 8 7 115 9 7 108 22 18 43 33
c 0 0 0 0 0 0 0 21 22 19 4 7 5 2 6 4 2 13 22 18 25
g 0 0 0 0 0 0 0 29 23 7 9 0 3 5 3 2 7 11 10 25 24
t 0 0 0 0 0 0 0 49 56 34 10 119 119 12 116 121 17 88 84 48 52
|
| oligos_7nt_test_vs_ctrl_m2_shift7 (oligos_7nt_test_vs_ctrl_m2) |
|
|
|
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/2; ncol2=14; w=0; offset=0; strand=D; shift=7; score= 1; -------wtwATTATTAttwt
; cor=; Ncor=
a 0 0 0 0 0 0 0 35 33 74 111 8 7 115 9 7 108 22 18 43 33
c 0 0 0 0 0 0 0 21 22 19 4 7 5 2 6 4 2 13 22 18 25
g 0 0 0 0 0 0 0 29 23 7 9 0 3 5 3 2 7 11 10 25 24
t 0 0 0 0 0 0 0 49 56 34 10 119 119 12 116 121 17 88 84 48 52
|
| oligos_6nt_test_vs_ctrl_m2_rc_shift0 (oligos_6nt_test_vs_ctrl_m2_rc) |
 |
|
|
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2_rc; m=2/2; ncol2=24; w=-7; offset=-7; strand=R; shift=0; score=0.421614; rbywwwTTWWATWAWWTtywd
; cor=; Ncor=
a 3 1 0 4 4 5 0 0 2 6 7 0 6 7 2 2 1 1 0 3 2
c 1 3 2 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 2 1 0
g 3 2 1 0 1 1 0 1 0 0 0 0 0 0 0 0 0 1 1 0 2
t 1 2 5 3 2 2 8 6 6 2 1 8 2 1 6 6 7 5 5 4 4
|
One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m3_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3) |
 |
|
|
; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=24; shift=0; ncol=24; wkaTtTtwAwATTTAaAaATtyth
; Alignment reference
a 6 3 10 2 3 2 4 5 17 9 13 2 2 2 15 10 14 10 15 2 0 4 4 5
c 1 4 4 1 2 0 3 1 0 1 1 0 0 0 0 2 1 3 1 1 3 5 4 6
g 3 5 0 2 1 2 1 0 0 2 2 1 2 2 0 3 1 0 0 1 3 2 4 1
t 7 5 3 12 11 13 9 11 0 5 1 14 13 13 2 2 1 4 1 13 11 6 5 5
|
| oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3) |
|
|
|
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/2; ncol2=24; w=0; offset=0; strand=D; shift=0; score= 1; wkaTtTtwAwATTTAaAaATtyth
; cor=; Ncor=
a 6 3 10 2 3 2 4 5 17 9 13 2 2 2 15 10 14 10 15 2 0 4 4 5
c 1 4 4 1 2 0 3 1 0 1 1 0 0 0 0 2 1 3 1 1 3 5 4 6
g 3 5 0 2 1 2 1 0 0 2 2 1 2 2 0 3 1 0 0 1 3 2 4 1
t 7 5 3 12 11 13 9 11 0 5 1 14 13 13 2 2 1 4 1 13 11 6 5 5
|
| oligos_7nt_test_vs_ctrl_m4_rc_shift2 (oligos_7nt_test_vs_ctrl_m4_rc) |
 |
|
|
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4_rc; m=2/2; ncol2=22; w=0; offset=2; strand=R; shift=2; score=0.678884; --ktyTtTaTTTTTAaAaawTywy
; cor=; Ncor=
a 0 0 2 2 3 1 3 0 11 1 1 2 1 0 12 11 15 10 10 5 0 2 7 4
c 0 0 4 3 8 1 0 1 2 1 0 0 1 1 0 1 1 4 2 1 3 8 2 5
g 0 0 5 4 1 0 3 0 1 1 1 2 1 0 1 3 1 0 2 1 0 2 3 3
t 0 0 6 8 5 15 11 16 3 14 15 13 14 16 4 2 0 3 3 10 14 5 5 5
|
One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m4_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4) |
 |
|
|
; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=22; shift=0; ncol=22; rwrAwttTtTAAAAAtAaAram
; Alignment reference
a 5 5 5 14 10 3 3 0 2 4 16 14 13 15 14 3 16 11 15 5 8 6
c 3 3 2 0 1 2 0 1 3 1 0 1 2 1 1 1 0 3 0 1 4 5
g 5 2 8 3 1 2 4 1 1 0 1 1 0 0 1 2 1 0 1 8 3 4
t 4 7 2 0 5 10 10 15 11 12 0 1 2 1 1 11 0 3 1 3 2 2
|
| oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4) |
|
|
|
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/2; ncol2=22; w=0; offset=0; strand=D; shift=0; score= 1; rwrAwttTtTAAAAAtAaAram
; cor=; Ncor=
a 5 5 5 14 10 3 3 0 2 4 16 14 13 15 14 3 16 11 15 5 8 6
c 3 3 2 0 1 2 0 1 3 1 0 1 2 1 1 1 0 3 0 1 4 5
g 5 2 8 3 1 2 4 1 1 0 1 1 0 0 1 2 1 0 1 8 3 4
t 4 7 2 0 5 10 10 15 11 12 0 1 2 1 1 11 0 3 1 3 2 2
|
| oligos_7nt_test_vs_ctrl_m3_rc_shift0 (oligos_7nt_test_vs_ctrl_m3_rc) |
 |
|
|
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3_rc; m=2/2; ncol2=24; w=0; offset=0; strand=R; shift=0; score=0.678884; daraATtTtTAAATwTwaAaAt
; cor=; Ncor=
a 5 5 6 11 13 1 4 1 2 2 13 13 14 1 5 0 11 9 13 11 12 3
c 1 4 2 3 1 0 0 1 3 0 2 2 1 2 2 0 0 1 2 1 2 0
g 6 4 5 3 1 1 3 1 2 0 0 0 0 1 1 0 1 3 0 2 1 4
t 5 4 4 0 2 15 10 14 10 15 2 2 2 13 9 17 5 4 2 3 2 10
|
One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m1_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1) |
 |
|
|
; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=14; shift=0; ncol=14; kymAGGACCTGgsr
; Alignment reference
a 52 35 60 223 4 3 174 4 3 2 11 47 59 92
c 35 88 120 2 3 3 7 223 222 16 11 32 73 35
g 88 48 29 10 230 229 9 7 5 4 180 131 65 63
t 62 66 28 2 0 2 47 3 7 215 35 27 40 47
|
| oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1) |
|
|
|
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/2; ncol2=14; w=0; offset=0; strand=D; shift=0; score= 1; kymAGGACCTGgsr
; cor=; Ncor=
a 52 35 60 223 4 3 174 4 3 2 11 47 59 92
c 35 88 120 2 3 3 7 223 222 16 11 32 73 35
g 88 48 29 10 230 229 9 7 5 4 180 131 65 63
t 62 66 28 2 0 2 47 3 7 215 35 27 40 47
|
| oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc) |
 |
|
|
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4_rc; m=2/2; ncol2=14; w=0; offset=0; strand=R; shift=0; score=0.923919; kyCAGGACCTkrsr
; cor=; Ncor=
a 29 32 15 161 2 1 159 4 4 4 10 76 29 50
c 20 79 139 1 2 5 2 165 169 7 11 27 62 33
g 63 24 9 10 175 173 5 6 4 5 53 55 47 57
t 71 48 20 11 4 4 17 8 6 167 109 25 45 43
|
One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m4_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4) |
 |
|
|
; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=14; shift=0; ncol=14; ysymAGGTCCTGrm
; Alignment reference
a 43 45 25 109 167 6 8 17 4 4 11 20 48 71
c 57 47 55 53 5 4 6 5 173 175 10 9 24 63
g 33 62 27 11 7 169 165 2 5 2 1 139 79 20
t 50 29 76 10 4 4 4 159 1 2 161 15 32 29
|
| oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4) |
|
|
|
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/2; ncol2=14; w=0; offset=0; strand=D; shift=0; score= 1; ysymAGGTCCTGrm
; cor=; Ncor=
a 43 45 25 109 167 6 8 17 4 4 11 20 48 71
c 57 47 55 53 5 4 6 5 173 175 10 9 24 63
g 33 62 27 11 7 169 165 2 5 2 1 139 79 20
t 50 29 76 10 4 4 4 159 1 2 161 15 32 29
|
| oligos_7nt_test_vs_ctrl_m1_rc_shift0 (oligos_7nt_test_vs_ctrl_m1_rc) |
 |
|
|
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1_rc; m=2/2; ncol2=14; w=0; offset=0; strand=R; shift=0; score=0.923919; yscCAGGTCCTkrm
; cor=; Ncor=
a 47 40 27 35 215 7 3 47 2 0 2 28 66 62
c 63 65 131 180 4 5 7 9 229 230 10 29 48 88
g 35 73 32 11 16 222 223 7 3 3 2 120 88 35
t 92 59 47 11 2 3 4 174 3 4 223 60 35 52
|
One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m3_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3) |
 |
|
|
; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=24; shift=0; ncol=24; ykCtwtwAATAaTTTAAAAratwa
; Alignment reference
a 2 3 0 4 5 3 7 14 15 4 15 13 2 2 0 19 17 18 15 6 12 4 6 10
c 7 3 15 2 2 3 2 2 1 0 0 2 0 0 2 1 2 2 2 2 1 4 4 3
g 3 6 3 1 1 2 2 1 2 2 1 2 0 2 0 0 0 0 2 12 3 3 1 3
t 8 8 2 13 12 12 9 3 2 14 4 3 18 16 18 0 1 0 1 0 4 9 9 4
|
| oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3) |
|
|
|
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/2; ncol2=24; w=0; offset=0; strand=D; shift=0; score= 1; ykCtwtwAATAaTTTAAAAratwa
; cor=; Ncor=
a 2 3 0 4 5 3 7 14 15 4 15 13 2 2 0 19 17 18 15 6 12 4 6 10
c 7 3 15 2 2 3 2 2 1 0 0 2 0 0 2 1 2 2 2 2 1 4 4 3
g 3 6 3 1 1 2 2 1 2 2 1 2 0 2 0 0 0 0 2 12 3 3 1 3
t 8 8 2 13 12 12 9 3 2 14 4 3 18 16 18 0 1 0 1 0 4 9 9 4
|
| oligos_6nt_test_vs_ctrl_m1_shift3 (oligos_6nt_test_vs_ctrl_m1) |
 |
|
|
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1; m=2/2; ncol2=24; w=0; offset=3; strand=D; shift=3; score=0.616938; ---kdTTAwtAATTTAAATTawTA
; cor=; Ncor=
a 0 0 0 3 4 2 3 11 10 3 11 11 1 3 1 13 11 14 2 3 10 4 2 12
c 0 0 0 1 2 0 0 0 2 3 1 2 0 1 1 1 1 1 1 1 0 0 3 1
g 0 0 0 5 5 3 1 3 0 0 1 1 1 1 1 1 1 0 2 1 3 2 0 0
t 0 0 0 7 5 11 12 2 4 10 3 2 14 11 13 1 3 1 11 11 3 10 11 3
|
One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m5_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5) |
 |
|
|
; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=12; shift=0; ncol=12; thCAAAGTTChk
; Alignment reference
a 23 26 6 88 88 85 2 5 5 9 29 23
c 18 25 80 7 3 3 1 3 7 74 29 22
g 22 19 6 0 3 3 87 4 7 6 8 24
t 32 25 3 0 1 4 5 83 76 6 29 26
|
| oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5) |
|
|
|
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/2; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; thCAAAGTTChk
; cor=; Ncor=
a 23 26 6 88 88 85 2 5 5 9 29 23
c 18 25 80 7 3 3 1 3 7 74 29 22
g 22 19 6 0 3 3 87 4 7 6 8 24
t 32 25 3 0 1 4 5 83 76 6 29 26
|
| oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc) |
 |
|
|
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5_rc; m=2/2; ncol2=12; w=0; offset=0; strand=R; shift=0; score=0.70126; twTAAAGTTTkw
; cor=; Ncor=
a 22 27 5 94 88 90 3 2 3 8 25 26
c 19 24 4 1 3 4 4 7 4 5 22 22
g 25 20 6 1 5 2 83 2 2 7 28 21
t 35 30 86 5 5 5 11 90 92 81 26 32
|
One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m5_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5) |
 |
|
|
; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=12; shift=0; ncol=12; wmAAACTTTAwa
; Alignment reference
a 32 26 81 92 90 11 5 5 5 86 30 35
c 21 28 7 2 2 83 2 5 1 6 20 25
g 22 22 5 4 7 4 4 3 1 4 24 19
t 26 25 8 3 2 3 90 88 94 5 27 22
|
| oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5) |
|
|
|
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/2; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; wmAAACTTTAwa
; cor=; Ncor=
a 32 26 81 92 90 11 5 5 5 86 30 35
c 21 28 7 2 2 83 2 5 1 6 20 25
g 22 22 5 4 7 4 4 3 1 4 24 19
t 26 25 8 3 2 3 90 88 94 5 27 22
|
| oligos_6nt_test_vs_ctrl_m5_rc_shift0 (oligos_6nt_test_vs_ctrl_m5_rc) |
 |
|
|
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5_rc; m=2/2; ncol2=12; w=0; offset=0; strand=R; shift=0; score=0.70126; mdGAACTTTGda
; cor=; Ncor=
a 26 29 6 76 83 5 4 1 0 3 25 32
c 24 8 6 7 4 87 3 3 0 6 19 22
g 22 29 74 7 3 1 3 3 7 80 25 18
t 23 29 9 5 5 2 85 88 88 6 26 23
|