/var/www/html/rsat/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title Peakmotifstreatdmsomerged -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	2109
	Sum of sequence lengths      	395323
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	187
	Possible positions           	393214
 Oligonucleotide statistics:
	Total occurrences    	364268
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	393214
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	3	60
	2	-24	[-479,-460]	-469.5	3	60
	3	-23	[-459,-440]	-449.5	3	60
	4	-22	[-439,-420]	-429.5	3	60
	5	-21	[-419,-400]	-409.5	3	60
	6	-20	[-399,-380]	-389.5	4	76
	7	-19	[-379,-360]	-369.5	6	112
	8	-18	[-359,-340]	-349.5	7	124
	9	-17	[-339,-320]	-329.5	9	158
	10	-16	[-319,-300]	-309.5	10	199
	11	-15	[-299,-280]	-289.5	11	212
	12	-14	[-279,-260]	-269.5	14	236
	13	-13	[-259,-240]	-249.5	23	399
	14	-12	[-239,-220]	-229.5	36	576
	15	-11	[-219,-200]	-209.5	48	818
	16	-10	[-199,-180]	-189.5	80	1269
	17	-9	[-179,-160]	-169.5	134	2234
	18	-8	[-159,-140]	-149.5	208	3478
	19	-7	[-139,-120]	-129.5	349	5538
	20	-6	[-119,-100]	-109.5	578	9103
	21	-5	[-99,-80]	-89.5	1088	16338
	22	-4	[-79,-60]	-69.5	2058	31439
	23	-3	[-59,-40]	-49.5	2097	41940
	24	-2	[-39,-20]	-29.5	2105	42017
	25	-1	[-19,0]	-9.5	2109	42151
	26	0	[1,20]	10.5	2109	42140
	27	1	[21,40]	30.5	2104	42003
	28	2	[41,60]	50.5	2097	41842
	29	3	[61,80]	70.5	1973	29514
	30	4	[81,100]	90.5	1036	15315
	31	5	[101,120]	110.5	561	8645
	32	6	[121,140]	130.5	332	5270
	33	7	[141,160]	150.5	205	3326
	34	8	[161,180]	170.5	131	2117
	35	9	[181,200]	190.5	78	1202
	36	10	[201,220]	210.5	48	792
	37	11	[221,240]	230.5	34	554
	38	12	[241,260]	250.5	22	383
	39	13	[261,280]	270.5	13	231
	40	14	[281,300]	290.5	11	211
	41	15	[301,320]	310.5	10	197
	42	16	[321,340]	330.5	9	154
	43	17	[341,360]	350.5	7	122
	44	18	[361,380]	370.5	6	108
	45	19	[381,400]	390.5	4	74
	46	20	[401,420]	410.5	3	60
	47	21	[421,440]	430.5	3	60
	48	22	[441,460]	450.5	3	60
	49	23	[461,480]	470.5	3	60
	50	24	[481,500]	490.5	3	57

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
cc cc 38700 385.0 49 1.1e-53 1.7e-52 51.76 1 0 0 0 0 0 0 4 4 10 7 12 13 40 51 74 128 243 358 631 1086 1895 3486 4274 4198 4115 4022 3989 3909 2702 1501 755 460 273 171 109 79 35 15 14 11 16 5 4 0 0 1 0 0 0 0
tt tt 16779 337.3 49 1.1e-44 1.8e-43 42.75 2 0 0 0 0 0 0 2 7 6 6 6 9 17 13 25 28 55 108 165 280 565 1267 1858 1884 1946 2012 1924 2031 1303 534 288 168 127 41 32 24 18 11 2 2 1 4 4 4 0 1 0 0 0 1
aa aa 17520 292.6 49 2.1e-36 3.4e-35 34.47 3 0 0 0 1 2 0 3 6 4 13 9 9 17 15 27 51 63 107 199 280 609 1447 2033 2011 2022 2039 2035 1946 1238 578 322 164 97 67 29 16 13 8 9 7 3 7 2 1 0 2 2 0 1 6
gg gg 39408 243.8 49 1.2e-27 1.9e-26 25.73 4 0 0 0 0 1 0 2 1 9 17 16 23 35 79 91 124 240 339 538 976 1603 3076 4198 4135 4016 3961 4151 4247 3098 1768 954 628 378 268 147 101 59 43 13 19 19 14 4 8 4 1 1 0 0 3
ct ct 24504 197.2 49 1.1e-19 1.8e-18 17.74 5 0 0 0 0 0 0 1 5 6 2 4 5 19 30 31 54 127 220 344 577 1126 2083 2746 2589 2686 2750 2644 2649 1800 911 441 239 179 99 42 34 23 15 5 6 2 4 2 1 0 1 0 0 0 2
gc gc 36100 158.3 49 2.0e-13 3.2e-12 11.50 6 0 0 0 0 0 5 6 2 6 11 12 16 32 48 79 109 226 315 558 875 1628 2921 3785 3835 3820 3693 3876 3777 2800 1517 820 484 310 220 117 75 39 34 13 10 11 7 5 2 1 0 0 0 0 0
ac ac 15896 140.6 49 8.7e-11 1.4e-09 8.86 7 0 0 0 1 0 1 1 2 0 3 4 4 10 25 24 46 85 123 190 384 733 1440 1751 1771 1721 1739 1712 1677 1166 553 312 177 84 61 31 15 23 12 5 4 2 1 0 0 0 0 1 0 1 1
ca ca 21545 129.3 49 3.6e-09 5.7e-08 7.24 8 0 0 0 2 0 2 3 7 7 3 8 9 17 23 37 68 105 165 269 524 919 1869 2391 2424 2327 2347 2324 2276 1601 796 433 241 138 86 44 19 20 13 4 5 6 5 3 1 1 0 1 0 2 0
at at 11704 123.6 49 2.2e-08 3.6e-07 6.44 9 0 0 0 1 2 0 7 7 8 9 8 10 15 16 22 35 44 84 119 219 420 911 1287 1325 1396 1360 1288 1253 895 381 229 133 70 43 24 19 11 16 6 5 4 4 5 2 0 2 3 0 0 6
tc tc 21503 118.9 49 9.7e-08 1.6e-06 5.81 10 0 0 0 0 1 0 2 8 13 4 7 9 18 31 24 64 106 204 273 549 923 1776 2400 2338 2402 2420 2257 2296 1563 793 396 238 155 86 48 24 23 15 6 8 6 5 3 3 1 1 2 0 0 2
ta ta 9054 115.6 49 2.6e-07 4.2e-06 5.37 11 0 0 0 0 0 0 3 2 2 0 1 2 9 12 12 14 33 64 84 166 372 763 1046 972 1009 1045 1031 1021 676 315 153 100 65 29 10 15 14 5 1 0 1 1 1 1 1 0 2 0 0 1
ag ag 24923 111.6 49 8.7e-07 1.4e-05 4.86 12 0 0 0 0 0 2 3 5 4 5 12 8 22 22 47 68 107 173 339 540 1014 2065 2719 2721 2593 2672 2670 2771 1954 972 578 339 215 115 74 23 29 12 11 7 2 3 2 4 1 0 0 0 0 0
cg cg 27423 107.5 49 2.9e-06 4.6e-05 4.34 13 0 0 0 0 1 3 4 1 6 12 10 14 23 49 64 98 184 268 414 717 1222 2176 2894 2900 2915 2776 2872 2805 2089 1145 662 402 234 170 110 64 37 34 13 8 13 6 2 3 1 0 1 0 0 1
tg tg 21394 82.7 49 1.9e-03 0.03 1.53 14 0 0 0 0 2 1 4 2 6 10 6 10 23 19 46 59 108 165 287 404 840 1654 2334 2339 2328 2304 2356 2396 1706 805 449 261 174 113 60 39 21 25 9 11 3 4 2 2 1 1 0 0 0 5
ga ga 21973 61.7 49 1.0e-01 1.7 -0.22 15 0 0 0 0 2 1 6 3 6 14 13 11 22 26 48 66 97 156 293 469 887 1835 2329 2414 2390 2357 2336 2384 1686 838 516 302 168 103 73 27 28 23 15 11 3 2 2 4 0 1 1 0 0 5
gt gt 15842 57.5 49 1.9e-01 3 -0.48 16 0 0 0 0 0 1 0 2 3 3 4 4 17 18 28 50 83 123 210 317 615 1229 1800 1710 1686 1682 1665 1770 1284 602 340 227 149 78 52 30 22 14 5 6 5 2 0 3 3 0 0 0 0 0 
 Host name	rsat
 Job started	2025-12-19.090925
 Job done	2025-12-19.090927
 Seconds	2.2
	user	2.2
	system	0.01
	cuser	0
;	csystem	0