/var/www/html/rsat/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	html_index   	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/results/discovered_motifs/peak-motifs_motifs_disco_compa
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	14	1022
		file1	2	18	458
		file1	3	14	610
		file1	4	12	1521
		file1	5	16	555
		file1	6	21	1336
		file1	7	18	1601
		file1	8	15	495
		file1	9	16	623
		file1	10	15	956
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		14		1022
		file2		2		18		458
		file2		3		14		610
		file2		4		12		1521
		file2		5		16		555
		file2		6		21		1336
		file2		7		18		1601
		file2		8		15		495
		file2		9		16		623
		file2		10		15		956
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 1.000 1.000 18 18 18 18 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 1.000 1.000 21 21 21 21 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m5 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 1.000 1.000 18 18 18 18 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m2 oligos_7nt_mkv4_m3 oligos_6nt_mkv3_m2 oligos_7nt_mkv4_m3 0.942 0.785 18 15 15 18 0.8333 0.8333 1.0000 D 3
oligos_7nt_mkv4_m3 oligos_6nt_mkv3_m2 oligos_7nt_mkv4_m3 oligos_6nt_mkv3_m2 0.942 0.785 15 18 15 18 0.8333 1.0000 0.8333 D -3
oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m3 oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m3 0.835 0.780 14 15 14 15 0.9333 1.0000 0.9333 D -1
oligos_7nt_mkv4_m3 oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m3 oligos_6nt_mkv3_m3 0.835 0.780 15 14 14 15 0.9333 0.9333 1.0000 D 1
oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m5 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m5 0.819 0.764 14 15 14 15 0.9333 1.0000 0.9333 D -1
oligos_7nt_mkv4_m5 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m5 oligos_6nt_mkv3_m1 0.819 0.764 15 14 14 15 0.9333 0.9333 1.0000 D 1
oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m2 0.894 0.695 14 18 14 18 0.7778 1.0000 0.7778 D -4
oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m3 0.894 0.695 18 14 14 18 0.7778 0.7778 1.0000 D 4
oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m4 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m4 0.995 0.664 18 12 12 18 0.6667 0.6667 1.0000 D 5
oligos_6nt_mkv3_m4 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m4 oligos_7nt_mkv4_m2 0.995 0.664 12 18 12 18 0.6667 1.0000 0.6667 D -5
oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m1 0.928 0.618 14 21 14 21 0.6667 1.0000 0.6667 D -2
oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m1 0.928 0.618 21 14 14 21 0.6667 0.6667 1.0000 D 2
oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m1 0.845 0.603 15 21 15 21 0.7143 1.0000 0.7143 D -1
oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m5 0.845 0.603 21 15 15 21 0.7143 0.7143 1.0000 D 1
oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m4 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m4 0.820 0.475 14 16 11 19 0.5789 0.7857 0.6875 R -5
oligos_7nt_mkv4_m4 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m4 oligos_6nt_mkv3_m1 0.820 0.475 16 14 11 19 0.5789 0.6875 0.7857 R -3
oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m1 0.852 0.462 16 21 13 24 0.5417 0.8125 0.6190 R -8
oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m4 0.852 0.462 21 16 13 24 0.5417 0.6190 0.8125 R -3 
 Host name	rsat
 Job started	2025-12-19.091004
 Job done	2025-12-19.091010
 Seconds	0.55
	user	0.55
	system	0.32
	cuser	5.18
;	csystem	0.79