One-to-n alignments

Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m4_shift8 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m4_shift8 (oligos_7nt_mkv4_m4)
; oligos_7nt_mkv4_m4; m=0 (reference); ncol1=16; shift=8; ncol=24; --------ggGGCGGAGCCGrgss ; Alignment reference a 0 0 0 0 0 0 0 0 80 117 50 9 30 13 6 442 12 14 24 55 289 66 106 85 c 0 0 0 0 0 0 0 0 143 131 54 26 559 29 24 43 10 532 486 45 126 107 166 211 g 0 0 0 0 0 0 0 0 316 311 507 578 18 570 584 116 596 61 72 476 167 411 279 257 t 0 0 0 0 0 0 0 0 84 64 12 10 16 11 9 22 5 16 41 47 41 39 72 70

oligos_7nt_mkv4_m4_shift8 (oligos_7nt_mkv4_m4)
; oligos_7nt_mkv4_m4 versus oligos_7nt_mkv4_m4; m=1/3; ncol2=16; w=0; offset=0; strand=D; shift=8; score= 1; --------ggGGCGGAGCCGrgss ; cor=; Ncor= a 0 0 0 0 0 0 0 0 80 117 50 9 30 13 6 442 12 14 24 55 289 66 106 85 c 0 0 0 0 0 0 0 0 143 131 54 26 559 29 24 43 10 532 486 45 126 107 166 211 g 0 0 0 0 0 0 0 0 316 311 507 578 18 570 584 116 596 61 72 476 167 411 279 257 t 0 0 0 0 0 0 0 0 84 64 12 10 16 11 9 22 5 16 41 47 41 39 72 70

oligos_6nt_mkv3_m1_rc_shift5 (oligos_6nt_mkv3_m1_rc)
; oligos_7nt_mkv4_m4 versus oligos_6nt_mkv3_m1_rc; m=2/3; ncol2=14; w=-3; offset=-3; strand=R; shift=5; score=0.474818; -----sscGGGGCGGGGcs----- ; cor=; Ncor= a 0 0 0 0 0 131 174 114 26 12 8 11 28 10 23 24 40 147 115 0 0 0 0 0 c 0 0 0 0 0 288 280 672 27 31 40 13 970 36 37 39 56 531 375 0 0 0 0 0 g 0 0 0 0 0 476 450 190 940 963 964 989 3 952 945 930 910 244 373 0 0 0 0 0 t 0 0 0 0 0 127 118 46 29 16 10 9 21 24 17 29 16 100 159 0 0 0 0 0

oligos_7nt_mkv4_m1_rc_shift0 (oligos_7nt_mkv4_m1_rc)
; oligos_7nt_mkv4_m4 versus oligos_7nt_mkv4_m1_rc; m=3/3; ncol2=21; w=-8; offset=-8; strand=R; shift=0; score=0.461737; sssgggmGGGGGCGGGGCcgs--- ; cor=; Ncor= a 184 201 176 147 129 144 485 135 74 116 24 30 52 32 22 71 62 80 89 252 196 0 0 0 c 421 436 335 258 234 266 383 181 88 81 58 59 1208 44 57 64 61 1050 763 277 334 0 0 0 g 574 577 713 837 870 825 316 959 1093 1111 1245 1226 31 1244 1190 1156 1186 136 320 553 670 0 0 0 t 157 122 112 94 103 101 152 61 81 28 9 21 45 16 67 45 27 70 164 254 136 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m4_shift5 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m4_shift5 (oligos_6nt_mkv3_m4)
; oligos_6nt_mkv3_m4; m=0 (reference); ncol1=12; shift=5; ncol=17; -----sgAATGGAATsr ; Alignment reference a 0 0 0 0 0 144 285 1459 1451 42 73 47 1488 1372 55 142 577 c 0 0 0 0 0 704 109 22 20 44 120 50 10 85 41 741 118 g 0 0 0 0 0 477 1005 18 40 24 1278 1364 10 35 27 484 727 t 0 0 0 0 0 196 122 22 10 1411 50 60 13 29 1398 154 99

oligos_6nt_mkv3_m4_shift5 (oligos_6nt_mkv3_m4)
; oligos_6nt_mkv3_m4 versus oligos_6nt_mkv3_m4; m=1/2; ncol2=12; w=0; offset=0; strand=D; shift=5; score= 1; -----sgAATGGAATsr ; cor=; Ncor= a 0 0 0 0 0 144 285 1459 1451 42 73 47 1488 1372 55 142 577 c 0 0 0 0 0 704 109 22 20 44 120 50 10 85 41 741 118 g 0 0 0 0 0 477 1005 18 40 24 1278 1364 10 35 27 484 727 t 0 0 0 0 0 196 122 22 10 1411 50 60 13 29 1398 154 99

oligos_7nt_mkv4_m2_shift0 (oligos_7nt_mkv4_m2)
; oligos_6nt_mkv3_m4 versus oligos_7nt_mkv4_m2; m=2/2; ncol2=18; w=-5; offset=-5; strand=D; shift=0; score=0.663509; rkmATsGAATGGAATsr ; cor=; Ncor= a 512 158 1081 1351 76 86 232 1538 1456 54 81 95 1554 1389 65 96 582 c 278 85 427 152 64 779 80 16 66 60 250 74 17 133 46 845 76 g 683 873 30 56 30 538 1230 26 50 20 1192 1384 14 38 23 544 870 t 128 485 63 42 1431 198 59 21 29 1467 78 48 16 41 1467 116 73

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m2_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m2_shift0 (oligos_6nt_mkv3_m2)
; oligos_6nt_mkv3_m2; m=0 (reference); ncol1=18; shift=0; ncol=18; vscccCAGCCAATCasvr ; Alignment reference a 122 108 114 68 72 34 328 35 17 4 427 394 16 23 303 81 128 126 c 159 144 149 230 199 337 41 28 419 442 9 29 25 368 61 128 145 96 g 122 142 96 98 96 43 66 371 9 5 2 20 26 59 77 170 130 155 t 55 64 99 62 91 44 23 24 13 7 20 15 391 8 17 79 55 81

oligos_6nt_mkv3_m2_shift0 (oligos_6nt_mkv3_m2)
; oligos_6nt_mkv3_m2 versus oligos_6nt_mkv3_m2; m=1/3; ncol2=18; w=0; offset=0; strand=D; shift=0; score= 1; vscccCAGCCAATCasvr ; cor=; Ncor= a 122 108 114 68 72 34 328 35 17 4 427 394 16 23 303 81 128 126 c 159 144 149 230 199 337 41 28 419 442 9 29 25 368 61 128 145 96 g 122 142 96 98 96 43 66 371 9 5 2 20 26 59 77 170 130 155 t 55 64 99 62 91 44 23 24 13 7 20 15 391 8 17 79 55 81

oligos_7nt_mkv4_m3_shift3 (oligos_7nt_mkv4_m3)
; oligos_6nt_mkv3_m2 versus oligos_7nt_mkv4_m3; m=2/3; ncol2=15; w=0; offset=3; strand=D; shift=3; score=0.785189; ---sbCAGCCAATsrgvr ; cor=; Ncor= a 0 0 0 111 91 29 387 36 10 9 454 439 5 47 132 64 163 131 c 0 0 0 181 144 337 30 23 471 475 11 22 22 290 47 109 151 91 g 0 0 0 135 131 76 64 421 7 6 9 23 10 142 291 280 130 203 t 0 0 0 68 129 53 14 15 7 5 21 11 458 16 25 42 51 70

oligos_6nt_mkv3_m3_shift4 (oligos_6nt_mkv3_m3)
; oligos_6nt_mkv3_m2 versus oligos_6nt_mkv3_m3; m=3/3; ncol2=14; w=0; offset=4; strand=D; shift=4; score=0.694976; ----ycaaCCAATCAkmr ; cor=; Ncor= a 0 0 0 0 121 131 338 362 28 16 581 562 10 42 437 105 193 197 c 0 0 0 0 165 212 87 45 526 557 10 15 14 483 59 140 204 92 g 0 0 0 0 149 126 144 136 37 20 4 20 7 66 89 212 125 217 t 0 0 0 0 175 141 41 67 19 17 15 13 579 19 25 153 88 104

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m2_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m2_shift0 (oligos_7nt_mkv4_m2)
; oligos_7nt_mkv4_m2; m=0 (reference); ncol1=18; shift=0; ncol=18; rkmATsGAATGGAATsrw ; Alignment reference a 512 158 1081 1351 76 86 232 1538 1456 54 81 95 1554 1389 65 96 582 1051 c 278 85 427 152 64 779 80 16 66 60 250 74 17 133 46 845 76 53 g 683 873 30 56 30 538 1230 26 50 20 1192 1384 14 38 23 544 870 30 t 128 485 63 42 1431 198 59 21 29 1467 78 48 16 41 1467 116 73 467

oligos_7nt_mkv4_m2_shift0 (oligos_7nt_mkv4_m2)
; oligos_7nt_mkv4_m2 versus oligos_7nt_mkv4_m2; m=1/2; ncol2=18; w=0; offset=0; strand=D; shift=0; score= 1; rkmATsGAATGGAATsrw ; cor=; Ncor= a 512 158 1081 1351 76 86 232 1538 1456 54 81 95 1554 1389 65 96 582 1051 c 278 85 427 152 64 779 80 16 66 60 250 74 17 133 46 845 76 53 g 683 873 30 56 30 538 1230 26 50 20 1192 1384 14 38 23 544 870 30 t 128 485 63 42 1431 198 59 21 29 1467 78 48 16 41 1467 116 73 467

oligos_6nt_mkv3_m4_shift5 (oligos_6nt_mkv3_m4)
; oligos_7nt_mkv4_m2 versus oligos_6nt_mkv3_m4; m=2/2; ncol2=12; w=0; offset=5; strand=D; shift=5; score=0.663509; -----sgAATGGAATsr- ; cor=; Ncor= a 0 0 0 0 0 144 285 1459 1451 42 73 47 1488 1372 55 142 577 0 c 0 0 0 0 0 704 109 22 20 44 120 50 10 85 41 741 118 0 g 0 0 0 0 0 477 1005 18 40 24 1278 1364 10 35 27 484 727 0 t 0 0 0 0 0 196 122 22 10 1411 50 60 13 29 1398 154 99 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m5_shift1 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m5_shift1 (oligos_7nt_mkv4_m5)
; oligos_7nt_mkv4_m5; m=0 (reference); ncol1=15; shift=1; ncol=16; -cscCCCCACCCCCss ; Alignment reference a 0 135 150 58 44 44 35 24 672 32 19 44 47 56 189 120 c 0 449 304 644 808 818 883 891 13 850 857 803 794 761 285 442 g 0 196 344 181 64 61 25 24 209 56 43 61 64 83 318 265 t 0 176 158 73 40 33 13 17 62 18 37 48 51 56 164 129

oligos_7nt_mkv4_m5_shift1 (oligos_7nt_mkv4_m5)
; oligos_7nt_mkv4_m5 versus oligos_7nt_mkv4_m5; m=1/3; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -cscCCCCACCCCCss ; cor=; Ncor= a 0 135 150 58 44 44 35 24 672 32 19 44 47 56 189 120 c 0 449 304 644 808 818 883 891 13 850 857 803 794 761 285 442 g 0 196 344 181 64 61 25 24 209 56 43 61 64 83 318 265 t 0 176 158 73 40 33 13 17 62 18 37 48 51 56 164 129

oligos_6nt_mkv3_m1_shift2 (oligos_6nt_mkv3_m1)
; oligos_7nt_mkv4_m5 versus oligos_6nt_mkv3_m1; m=2/3; ncol2=14; w=0; offset=1; strand=D; shift=2; score=0.764246; --sgCCCCGCCCCgss ; cor=; Ncor= a 0 0 159 100 16 29 17 24 21 9 10 16 29 46 118 127 c 0 0 373 244 910 930 945 952 3 989 964 963 940 190 450 476 g 0 0 375 531 56 39 37 36 970 13 40 31 27 672 280 288 t 0 0 115 147 40 24 23 10 28 11 8 12 26 114 174 131

oligos_7nt_mkv4_m1_shift0 (oligos_7nt_mkv4_m1)
; oligos_7nt_mkv4_m5 versus oligos_7nt_mkv4_m1; m=3/3; ncol2=21; w=-1; offset=-1; strand=D; shift=0; score=0.603256; scgGCCCCGCCCCCkc ; cor=; Ncor= a 136 254 164 70 27 45 67 16 45 21 9 28 81 61 152 101 c 670 553 320 136 1186 1156 1190 1244 31 1226 1245 1111 1093 959 316 825 g 334 277 763 1050 61 64 57 44 1208 59 58 81 88 181 383 266 t 196 252 89 80 62 71 22 32 52 30 24 116 74 135 485 144

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m3_shift3 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m3_shift3 (oligos_7nt_mkv4_m3)
; oligos_7nt_mkv4_m3; m=0 (reference); ncol1=15; shift=3; ncol=18; ---sbCAGCCAATsrgvr ; Alignment reference a 0 0 0 111 91 29 387 36 10 9 454 439 5 47 132 64 163 131 c 0 0 0 181 144 337 30 23 471 475 11 22 22 290 47 109 151 91 g 0 0 0 135 131 76 64 421 7 6 9 23 10 142 291 280 130 203 t 0 0 0 68 129 53 14 15 7 5 21 11 458 16 25 42 51 70

oligos_7nt_mkv4_m3_shift3 (oligos_7nt_mkv4_m3)
; oligos_7nt_mkv4_m3 versus oligos_7nt_mkv4_m3; m=1/3; ncol2=15; w=0; offset=0; strand=D; shift=3; score= 1; ---sbCAGCCAATsrgvr ; cor=; Ncor= a 0 0 0 111 91 29 387 36 10 9 454 439 5 47 132 64 163 131 c 0 0 0 181 144 337 30 23 471 475 11 22 22 290 47 109 151 91 g 0 0 0 135 131 76 64 421 7 6 9 23 10 142 291 280 130 203 t 0 0 0 68 129 53 14 15 7 5 21 11 458 16 25 42 51 70

oligos_6nt_mkv3_m2_shift0 (oligos_6nt_mkv3_m2)
; oligos_7nt_mkv4_m3 versus oligos_6nt_mkv3_m2; m=2/3; ncol2=18; w=-3; offset=-3; strand=D; shift=0; score=0.785189; vscccCAGCCAATCasvr ; cor=; Ncor= a 122 108 114 68 72 34 328 35 17 4 427 394 16 23 303 81 128 126 c 159 144 149 230 199 337 41 28 419 442 9 29 25 368 61 128 145 96 g 122 142 96 98 96 43 66 371 9 5 2 20 26 59 77 170 130 155 t 55 64 99 62 91 44 23 24 13 7 20 15 391 8 17 79 55 81

oligos_6nt_mkv3_m3_shift4 (oligos_6nt_mkv3_m3)
; oligos_7nt_mkv4_m3 versus oligos_6nt_mkv3_m3; m=3/3; ncol2=14; w=0; offset=1; strand=D; shift=4; score=0.779567; ----ycaaCCAATCAkmr ; cor=; Ncor= a 0 0 0 0 121 131 338 362 28 16 581 562 10 42 437 105 193 197 c 0 0 0 0 165 212 87 45 526 557 10 15 14 483 59 140 204 92 g 0 0 0 0 149 126 144 136 37 20 4 20 7 66 89 212 125 217 t 0 0 0 0 175 141 41 67 19 17 15 13 579 19 25 153 88 104

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m5_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m5_shift0 (oligos_6nt_mkv3_m5)
; oligos_6nt_mkv3_m5; m=0 (reference); ncol1=16; shift=0; ncol=16; ssGCGTGCGCACGCss ; Alignment reference a 85 61 40 54 58 14 16 14 15 8 404 31 55 30 90 51 c 150 262 66 396 83 106 22 501 25 509 30 384 51 421 143 269 g 269 144 419 50 383 29 509 25 501 22 107 83 396 66 261 152 t 51 88 30 55 31 406 8 15 14 16 14 57 53 38 61 83

oligos_6nt_mkv3_m5_shift0 (oligos_6nt_mkv3_m5)
; oligos_6nt_mkv3_m5 versus oligos_6nt_mkv3_m5; m=1/1; ncol2=16; w=0; offset=0; strand=D; shift=0; score= 1; ssGCGTGCGCACGCss ; cor=; Ncor= a 85 61 40 54 58 14 16 14 15 8 404 31 55 30 90 51 c 150 262 66 396 83 106 22 501 25 509 30 384 51 421 143 269 g 269 144 419 50 383 29 509 25 501 22 107 83 396 66 261 152 t 51 88 30 55 31 406 8 15 14 16 14 57 53 38 61 83

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m3_shift4 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m3_shift4 (oligos_6nt_mkv3_m3)
; oligos_6nt_mkv3_m3; m=0 (reference); ncol1=14; shift=4; ncol=18; ----ycaaCCAATCAkmr ; Alignment reference a 0 0 0 0 121 131 338 362 28 16 581 562 10 42 437 105 193 197 c 0 0 0 0 165 212 87 45 526 557 10 15 14 483 59 140 204 92 g 0 0 0 0 149 126 144 136 37 20 4 20 7 66 89 212 125 217 t 0 0 0 0 175 141 41 67 19 17 15 13 579 19 25 153 88 104

oligos_6nt_mkv3_m3_shift4 (oligos_6nt_mkv3_m3)
; oligos_6nt_mkv3_m3 versus oligos_6nt_mkv3_m3; m=1/3; ncol2=14; w=0; offset=0; strand=D; shift=4; score= 1; ----ycaaCCAATCAkmr ; cor=; Ncor= a 0 0 0 0 121 131 338 362 28 16 581 562 10 42 437 105 193 197 c 0 0 0 0 165 212 87 45 526 557 10 15 14 483 59 140 204 92 g 0 0 0 0 149 126 144 136 37 20 4 20 7 66 89 212 125 217 t 0 0 0 0 175 141 41 67 19 17 15 13 579 19 25 153 88 104

oligos_7nt_mkv4_m3_shift3 (oligos_7nt_mkv4_m3)
; oligos_6nt_mkv3_m3 versus oligos_7nt_mkv4_m3; m=2/3; ncol2=15; w=-1; offset=-1; strand=D; shift=3; score=0.779567; ---sbCAGCCAATsrgvr ; cor=; Ncor= a 0 0 0 111 91 29 387 36 10 9 454 439 5 47 132 64 163 131 c 0 0 0 181 144 337 30 23 471 475 11 22 22 290 47 109 151 91 g 0 0 0 135 131 76 64 421 7 6 9 23 10 142 291 280 130 203 t 0 0 0 68 129 53 14 15 7 5 21 11 458 16 25 42 51 70

oligos_6nt_mkv3_m2_shift0 (oligos_6nt_mkv3_m2)
; oligos_6nt_mkv3_m3 versus oligos_6nt_mkv3_m2; m=3/3; ncol2=18; w=-4; offset=-4; strand=D; shift=0; score=0.694976; vscccCAGCCAATCasvr ; cor=; Ncor= a 122 108 114 68 72 34 328 35 17 4 427 394 16 23 303 81 128 126 c 159 144 149 230 199 337 41 28 419 442 9 29 25 368 61 128 145 96 g 122 142 96 98 96 43 66 371 9 5 2 20 26 59 77 170 130 155 t 55 64 99 62 91 44 23 24 13 7 20 15 391 8 17 79 55 81

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m1_shift5 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m1_shift5 (oligos_6nt_mkv3_m1)
; oligos_6nt_mkv3_m1; m=0 (reference); ncol1=14; shift=5; ncol=19; -----sgCCCCGCCCCgss ; Alignment reference a 0 0 0 0 0 159 100 16 29 17 24 21 9 10 16 29 46 118 127 c 0 0 0 0 0 373 244 910 930 945 952 3 989 964 963 940 190 450 476 g 0 0 0 0 0 375 531 56 39 37 36 970 13 40 31 27 672 280 288 t 0 0 0 0 0 115 147 40 24 23 10 28 11 8 12 26 114 174 131

oligos_6nt_mkv3_m1_shift5 (oligos_6nt_mkv3_m1)
; oligos_6nt_mkv3_m1 versus oligos_6nt_mkv3_m1; m=1/4; ncol2=14; w=0; offset=0; strand=D; shift=5; score= 1; -----sgCCCCGCCCCgss ; cor=; Ncor= a 0 0 0 0 0 159 100 16 29 17 24 21 9 10 16 29 46 118 127 c 0 0 0 0 0 373 244 910 930 945 952 3 989 964 963 940 190 450 476 g 0 0 0 0 0 375 531 56 39 37 36 970 13 40 31 27 672 280 288 t 0 0 0 0 0 115 147 40 24 23 10 28 11 8 12 26 114 174 131

oligos_7nt_mkv4_m5_shift4 (oligos_7nt_mkv4_m5)
; oligos_6nt_mkv3_m1 versus oligos_7nt_mkv4_m5; m=2/4; ncol2=15; w=-1; offset=-1; strand=D; shift=4; score=0.764246; ----cscCCCCACCCCCss ; cor=; Ncor= a 0 0 0 0 135 150 58 44 44 35 24 672 32 19 44 47 56 189 120 c 0 0 0 0 449 304 644 808 818 883 891 13 850 857 803 794 761 285 442 g 0 0 0 0 196 344 181 64 61 25 24 209 56 43 61 64 83 318 265 t 0 0 0 0 176 158 73 40 33 13 17 62 18 37 48 51 56 164 129

oligos_7nt_mkv4_m1_shift3 (oligos_7nt_mkv4_m1)
; oligos_6nt_mkv3_m1 versus oligos_7nt_mkv4_m1; m=3/4; ncol2=21; w=-2; offset=-2; strand=D; shift=3; score=0.618476; ---scgGCCCCGCCCCCkc ; cor=; Ncor= a 0 0 0 136 254 164 70 27 45 67 16 45 21 9 28 81 61 152 101 c 0 0 0 670 553 320 136 1186 1156 1190 1244 31 1226 1245 1111 1093 959 316 825 g 0 0 0 334 277 763 1050 61 64 57 44 1208 59 58 81 88 181 383 266 t 0 0 0 196 252 89 80 62 71 22 32 52 30 24 116 74 135 485 144

oligos_7nt_mkv4_m4_rc_shift0 (oligos_7nt_mkv4_m4_rc)
; oligos_6nt_mkv3_m1 versus oligos_7nt_mkv4_m4_rc; m=4/4; ncol2=16; w=-5; offset=-5; strand=R; shift=0; score=0.474818; sscyCGGCTCCGCCcc--- ; cor=; Ncor= a 70 72 39 41 47 41 16 5 22 9 11 16 10 12 64 84 0 0 0 c 257 279 411 167 476 72 61 596 116 584 570 18 578 507 311 316 0 0 0 g 211 166 107 126 45 486 532 10 43 24 29 559 26 54 131 143 0 0 0 t 85 106 66 289 55 24 14 12 442 6 13 30 9 50 117 80 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m1_shift3 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m1_shift3 (oligos_7nt_mkv4_m1)
; oligos_7nt_mkv4_m1; m=0 (reference); ncol1=21; shift=3; ncol=24; ---scgGCCCCGCCCCCkcccsss ; Alignment reference a 0 0 0 136 254 164 70 27 45 67 16 45 21 9 28 81 61 152 101 103 94 112 122 157 c 0 0 0 670 553 320 136 1186 1156 1190 1244 31 1226 1245 1111 1093 959 316 825 870 837 713 577 574 g 0 0 0 334 277 763 1050 61 64 57 44 1208 59 58 81 88 181 383 266 234 258 335 436 421 t 0 0 0 196 252 89 80 62 71 22 32 52 30 24 116 74 135 485 144 129 147 176 201 184

oligos_7nt_mkv4_m1_shift3 (oligos_7nt_mkv4_m1)
; oligos_7nt_mkv4_m1 versus oligos_7nt_mkv4_m1; m=1/4; ncol2=21; w=0; offset=0; strand=D; shift=3; score= 1; ---scgGCCCCGCCCCCkcccsss ; cor=; Ncor= a 0 0 0 136 254 164 70 27 45 67 16 45 21 9 28 81 61 152 101 103 94 112 122 157 c 0 0 0 670 553 320 136 1186 1156 1190 1244 31 1226 1245 1111 1093 959 316 825 870 837 713 577 574 g 0 0 0 334 277 763 1050 61 64 57 44 1208 59 58 81 88 181 383 266 234 258 335 436 421 t 0 0 0 196 252 89 80 62 71 22 32 52 30 24 116 74 135 485 144 129 147 176 201 184

oligos_6nt_mkv3_m1_shift5 (oligos_6nt_mkv3_m1)
; oligos_7nt_mkv4_m1 versus oligos_6nt_mkv3_m1; m=2/4; ncol2=14; w=0; offset=2; strand=D; shift=5; score=0.618476; -----sgCCCCGCCCCgss----- ; cor=; Ncor= a 0 0 0 0 0 159 100 16 29 17 24 21 9 10 16 29 46 118 127 0 0 0 0 0 c 0 0 0 0 0 373 244 910 930 945 952 3 989 964 963 940 190 450 476 0 0 0 0 0 g 0 0 0 0 0 375 531 56 39 37 36 970 13 40 31 27 672 280 288 0 0 0 0 0 t 0 0 0 0 0 115 147 40 24 23 10 28 11 8 12 26 114 174 131 0 0 0 0 0

oligos_7nt_mkv4_m5_shift4 (oligos_7nt_mkv4_m5)
; oligos_7nt_mkv4_m1 versus oligos_7nt_mkv4_m5; m=3/4; ncol2=15; w=0; offset=1; strand=D; shift=4; score=0.603256; ----cscCCCCACCCCCss----- ; cor=; Ncor= a 0 0 0 0 135 150 58 44 44 35 24 672 32 19 44 47 56 189 120 0 0 0 0 0 c 0 0 0 0 449 304 644 808 818 883 891 13 850 857 803 794 761 285 442 0 0 0 0 0 g 0 0 0 0 196 344 181 64 61 25 24 209 56 43 61 64 83 318 265 0 0 0 0 0 t 0 0 0 0 176 158 73 40 33 13 17 62 18 37 48 51 56 164 129 0 0 0 0 0

oligos_7nt_mkv4_m4_rc_shift0 (oligos_7nt_mkv4_m4_rc)
; oligos_7nt_mkv4_m1 versus oligos_7nt_mkv4_m4_rc; m=4/4; ncol2=16; w=-3; offset=-3; strand=R; shift=0; score=0.461737; sscyCGGCTCCGCCcc-------- ; cor=; Ncor= a 70 72 39 41 47 41 16 5 22 9 11 16 10 12 64 84 0 0 0 0 0 0 0 0 c 257 279 411 167 476 72 61 596 116 584 570 18 578 507 311 316 0 0 0 0 0 0 0 0 g 211 166 107 126 45 486 532 10 43 24 29 559 26 54 131 143 0 0 0 0 0 0 0 0 t 85 106 66 289 55 24 14 12 442 6 13 30 9 50 117 80 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m4_shift8 (oligos_7nt_mkv4_m4)				; oligos_7nt_mkv4_m4; m=0 (reference); ncol1=16; shift=8; ncol=24; --------ggGGCGGAGCCGrgss ; Alignment reference a 0 0 0 0 0 0 0 0 80 117 50 9 30 13 6 442 12 14 24 55 289 66 106 85 c 0 0 0 0 0 0 0 0 143 131 54 26 559 29 24 43 10 532 486 45 126 107 166 211 g 0 0 0 0 0 0 0 0 316 311 507 578 18 570 584 116 596 61 72 476 167 411 279 257 t 0 0 0 0 0 0 0 0 84 64 12 10 16 11 9 22 5 16 41 47 41 39 72 70
oligos_7nt_mkv4_m4_shift8 (oligos_7nt_mkv4_m4)				; oligos_7nt_mkv4_m4 versus oligos_7nt_mkv4_m4; m=1/3; ncol2=16; w=0; offset=0; strand=D; shift=8; score= 1; --------ggGGCGGAGCCGrgss ; cor=; Ncor= a 0 0 0 0 0 0 0 0 80 117 50 9 30 13 6 442 12 14 24 55 289 66 106 85 c 0 0 0 0 0 0 0 0 143 131 54 26 559 29 24 43 10 532 486 45 126 107 166 211 g 0 0 0 0 0 0 0 0 316 311 507 578 18 570 584 116 596 61 72 476 167 411 279 257 t 0 0 0 0 0 0 0 0 84 64 12 10 16 11 9 22 5 16 41 47 41 39 72 70
oligos_6nt_mkv3_m1_rc_shift5 (oligos_6nt_mkv3_m1_rc)				; oligos_7nt_mkv4_m4 versus oligos_6nt_mkv3_m1_rc; m=2/3; ncol2=14; w=-3; offset=-3; strand=R; shift=5; score=0.474818; -----sscGGGGCGGGGcs----- ; cor=; Ncor= a 0 0 0 0 0 131 174 114 26 12 8 11 28 10 23 24 40 147 115 0 0 0 0 0 c 0 0 0 0 0 288 280 672 27 31 40 13 970 36 37 39 56 531 375 0 0 0 0 0 g 0 0 0 0 0 476 450 190 940 963 964 989 3 952 945 930 910 244 373 0 0 0 0 0 t 0 0 0 0 0 127 118 46 29 16 10 9 21 24 17 29 16 100 159 0 0 0 0 0
oligos_7nt_mkv4_m1_rc_shift0 (oligos_7nt_mkv4_m1_rc)				; oligos_7nt_mkv4_m4 versus oligos_7nt_mkv4_m1_rc; m=3/3; ncol2=21; w=-8; offset=-8; strand=R; shift=0; score=0.461737; sssgggmGGGGGCGGGGCcgs--- ; cor=; Ncor= a 184 201 176 147 129 144 485 135 74 116 24 30 52 32 22 71 62 80 89 252 196 0 0 0 c 421 436 335 258 234 266 383 181 88 81 58 59 1208 44 57 64 61 1050 763 277 334 0 0 0 g 574 577 713 837 870 825 316 959 1093 1111 1245 1226 31 1244 1190 1156 1186 136 320 553 670 0 0 0 t 157 122 112 94 103 101 152 61 81 28 9 21 45 16 67 45 27 70 164 254 136 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m2_shift0 (oligos_6nt_mkv3_m2)				; oligos_6nt_mkv3_m2; m=0 (reference); ncol1=18; shift=0; ncol=18; vscccCAGCCAATCasvr ; Alignment reference a 122 108 114 68 72 34 328 35 17 4 427 394 16 23 303 81 128 126 c 159 144 149 230 199 337 41 28 419 442 9 29 25 368 61 128 145 96 g 122 142 96 98 96 43 66 371 9 5 2 20 26 59 77 170 130 155 t 55 64 99 62 91 44 23 24 13 7 20 15 391 8 17 79 55 81
oligos_6nt_mkv3_m2_shift0 (oligos_6nt_mkv3_m2)				; oligos_6nt_mkv3_m2 versus oligos_6nt_mkv3_m2; m=1/3; ncol2=18; w=0; offset=0; strand=D; shift=0; score= 1; vscccCAGCCAATCasvr ; cor=; Ncor= a 122 108 114 68 72 34 328 35 17 4 427 394 16 23 303 81 128 126 c 159 144 149 230 199 337 41 28 419 442 9 29 25 368 61 128 145 96 g 122 142 96 98 96 43 66 371 9 5 2 20 26 59 77 170 130 155 t 55 64 99 62 91 44 23 24 13 7 20 15 391 8 17 79 55 81
oligos_7nt_mkv4_m3_shift3 (oligos_7nt_mkv4_m3)				; oligos_6nt_mkv3_m2 versus oligos_7nt_mkv4_m3; m=2/3; ncol2=15; w=0; offset=3; strand=D; shift=3; score=0.785189; ---sbCAGCCAATsrgvr ; cor=; Ncor= a 0 0 0 111 91 29 387 36 10 9 454 439 5 47 132 64 163 131 c 0 0 0 181 144 337 30 23 471 475 11 22 22 290 47 109 151 91 g 0 0 0 135 131 76 64 421 7 6 9 23 10 142 291 280 130 203 t 0 0 0 68 129 53 14 15 7 5 21 11 458 16 25 42 51 70
oligos_6nt_mkv3_m3_shift4 (oligos_6nt_mkv3_m3)				; oligos_6nt_mkv3_m2 versus oligos_6nt_mkv3_m3; m=3/3; ncol2=14; w=0; offset=4; strand=D; shift=4; score=0.694976; ----ycaaCCAATCAkmr ; cor=; Ncor= a 0 0 0 0 121 131 338 362 28 16 581 562 10 42 437 105 193 197 c 0 0 0 0 165 212 87 45 526 557 10 15 14 483 59 140 204 92 g 0 0 0 0 149 126 144 136 37 20 4 20 7 66 89 212 125 217 t 0 0 0 0 175 141 41 67 19 17 15 13 579 19 25 153 88 104

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m5_shift1 (oligos_7nt_mkv4_m5)				; oligos_7nt_mkv4_m5; m=0 (reference); ncol1=15; shift=1; ncol=16; -cscCCCCACCCCCss ; Alignment reference a 0 135 150 58 44 44 35 24 672 32 19 44 47 56 189 120 c 0 449 304 644 808 818 883 891 13 850 857 803 794 761 285 442 g 0 196 344 181 64 61 25 24 209 56 43 61 64 83 318 265 t 0 176 158 73 40 33 13 17 62 18 37 48 51 56 164 129
oligos_7nt_mkv4_m5_shift1 (oligos_7nt_mkv4_m5)				; oligos_7nt_mkv4_m5 versus oligos_7nt_mkv4_m5; m=1/3; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -cscCCCCACCCCCss ; cor=; Ncor= a 0 135 150 58 44 44 35 24 672 32 19 44 47 56 189 120 c 0 449 304 644 808 818 883 891 13 850 857 803 794 761 285 442 g 0 196 344 181 64 61 25 24 209 56 43 61 64 83 318 265 t 0 176 158 73 40 33 13 17 62 18 37 48 51 56 164 129
oligos_6nt_mkv3_m1_shift2 (oligos_6nt_mkv3_m1)				; oligos_7nt_mkv4_m5 versus oligos_6nt_mkv3_m1; m=2/3; ncol2=14; w=0; offset=1; strand=D; shift=2; score=0.764246; --sgCCCCGCCCCgss ; cor=; Ncor= a 0 0 159 100 16 29 17 24 21 9 10 16 29 46 118 127 c 0 0 373 244 910 930 945 952 3 989 964 963 940 190 450 476 g 0 0 375 531 56 39 37 36 970 13 40 31 27 672 280 288 t 0 0 115 147 40 24 23 10 28 11 8 12 26 114 174 131
oligos_7nt_mkv4_m1_shift0 (oligos_7nt_mkv4_m1)				; oligos_7nt_mkv4_m5 versus oligos_7nt_mkv4_m1; m=3/3; ncol2=21; w=-1; offset=-1; strand=D; shift=0; score=0.603256; scgGCCCCGCCCCCkc ; cor=; Ncor= a 136 254 164 70 27 45 67 16 45 21 9 28 81 61 152 101 c 670 553 320 136 1186 1156 1190 1244 31 1226 1245 1111 1093 959 316 825 g 334 277 763 1050 61 64 57 44 1208 59 58 81 88 181 383 266 t 196 252 89 80 62 71 22 32 52 30 24 116 74 135 485 144

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m3_shift3 (oligos_7nt_mkv4_m3)				; oligos_7nt_mkv4_m3; m=0 (reference); ncol1=15; shift=3; ncol=18; ---sbCAGCCAATsrgvr ; Alignment reference a 0 0 0 111 91 29 387 36 10 9 454 439 5 47 132 64 163 131 c 0 0 0 181 144 337 30 23 471 475 11 22 22 290 47 109 151 91 g 0 0 0 135 131 76 64 421 7 6 9 23 10 142 291 280 130 203 t 0 0 0 68 129 53 14 15 7 5 21 11 458 16 25 42 51 70
oligos_7nt_mkv4_m3_shift3 (oligos_7nt_mkv4_m3)				; oligos_7nt_mkv4_m3 versus oligos_7nt_mkv4_m3; m=1/3; ncol2=15; w=0; offset=0; strand=D; shift=3; score= 1; ---sbCAGCCAATsrgvr ; cor=; Ncor= a 0 0 0 111 91 29 387 36 10 9 454 439 5 47 132 64 163 131 c 0 0 0 181 144 337 30 23 471 475 11 22 22 290 47 109 151 91 g 0 0 0 135 131 76 64 421 7 6 9 23 10 142 291 280 130 203 t 0 0 0 68 129 53 14 15 7 5 21 11 458 16 25 42 51 70
oligos_6nt_mkv3_m2_shift0 (oligos_6nt_mkv3_m2)				; oligos_7nt_mkv4_m3 versus oligos_6nt_mkv3_m2; m=2/3; ncol2=18; w=-3; offset=-3; strand=D; shift=0; score=0.785189; vscccCAGCCAATCasvr ; cor=; Ncor= a 122 108 114 68 72 34 328 35 17 4 427 394 16 23 303 81 128 126 c 159 144 149 230 199 337 41 28 419 442 9 29 25 368 61 128 145 96 g 122 142 96 98 96 43 66 371 9 5 2 20 26 59 77 170 130 155 t 55 64 99 62 91 44 23 24 13 7 20 15 391 8 17 79 55 81
oligos_6nt_mkv3_m3_shift4 (oligos_6nt_mkv3_m3)				; oligos_7nt_mkv4_m3 versus oligos_6nt_mkv3_m3; m=3/3; ncol2=14; w=0; offset=1; strand=D; shift=4; score=0.779567; ----ycaaCCAATCAkmr ; cor=; Ncor= a 0 0 0 0 121 131 338 362 28 16 581 562 10 42 437 105 193 197 c 0 0 0 0 165 212 87 45 526 557 10 15 14 483 59 140 204 92 g 0 0 0 0 149 126 144 136 37 20 4 20 7 66 89 212 125 217 t 0 0 0 0 175 141 41 67 19 17 15 13 579 19 25 153 88 104

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m3_shift4 (oligos_6nt_mkv3_m3)				; oligos_6nt_mkv3_m3; m=0 (reference); ncol1=14; shift=4; ncol=18; ----ycaaCCAATCAkmr ; Alignment reference a 0 0 0 0 121 131 338 362 28 16 581 562 10 42 437 105 193 197 c 0 0 0 0 165 212 87 45 526 557 10 15 14 483 59 140 204 92 g 0 0 0 0 149 126 144 136 37 20 4 20 7 66 89 212 125 217 t 0 0 0 0 175 141 41 67 19 17 15 13 579 19 25 153 88 104
oligos_6nt_mkv3_m3_shift4 (oligos_6nt_mkv3_m3)				; oligos_6nt_mkv3_m3 versus oligos_6nt_mkv3_m3; m=1/3; ncol2=14; w=0; offset=0; strand=D; shift=4; score= 1; ----ycaaCCAATCAkmr ; cor=; Ncor= a 0 0 0 0 121 131 338 362 28 16 581 562 10 42 437 105 193 197 c 0 0 0 0 165 212 87 45 526 557 10 15 14 483 59 140 204 92 g 0 0 0 0 149 126 144 136 37 20 4 20 7 66 89 212 125 217 t 0 0 0 0 175 141 41 67 19 17 15 13 579 19 25 153 88 104
oligos_7nt_mkv4_m3_shift3 (oligos_7nt_mkv4_m3)				; oligos_6nt_mkv3_m3 versus oligos_7nt_mkv4_m3; m=2/3; ncol2=15; w=-1; offset=-1; strand=D; shift=3; score=0.779567; ---sbCAGCCAATsrgvr ; cor=; Ncor= a 0 0 0 111 91 29 387 36 10 9 454 439 5 47 132 64 163 131 c 0 0 0 181 144 337 30 23 471 475 11 22 22 290 47 109 151 91 g 0 0 0 135 131 76 64 421 7 6 9 23 10 142 291 280 130 203 t 0 0 0 68 129 53 14 15 7 5 21 11 458 16 25 42 51 70
oligos_6nt_mkv3_m2_shift0 (oligos_6nt_mkv3_m2)				; oligos_6nt_mkv3_m3 versus oligos_6nt_mkv3_m2; m=3/3; ncol2=18; w=-4; offset=-4; strand=D; shift=0; score=0.694976; vscccCAGCCAATCasvr ; cor=; Ncor= a 122 108 114 68 72 34 328 35 17 4 427 394 16 23 303 81 128 126 c 159 144 149 230 199 337 41 28 419 442 9 29 25 368 61 128 145 96 g 122 142 96 98 96 43 66 371 9 5 2 20 26 59 77 170 130 155 t 55 64 99 62 91 44 23 24 13 7 20 15 391 8 17 79 55 81

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m1_shift5 (oligos_6nt_mkv3_m1)				; oligos_6nt_mkv3_m1; m=0 (reference); ncol1=14; shift=5; ncol=19; -----sgCCCCGCCCCgss ; Alignment reference a 0 0 0 0 0 159 100 16 29 17 24 21 9 10 16 29 46 118 127 c 0 0 0 0 0 373 244 910 930 945 952 3 989 964 963 940 190 450 476 g 0 0 0 0 0 375 531 56 39 37 36 970 13 40 31 27 672 280 288 t 0 0 0 0 0 115 147 40 24 23 10 28 11 8 12 26 114 174 131
oligos_6nt_mkv3_m1_shift5 (oligos_6nt_mkv3_m1)				; oligos_6nt_mkv3_m1 versus oligos_6nt_mkv3_m1; m=1/4; ncol2=14; w=0; offset=0; strand=D; shift=5; score= 1; -----sgCCCCGCCCCgss ; cor=; Ncor= a 0 0 0 0 0 159 100 16 29 17 24 21 9 10 16 29 46 118 127 c 0 0 0 0 0 373 244 910 930 945 952 3 989 964 963 940 190 450 476 g 0 0 0 0 0 375 531 56 39 37 36 970 13 40 31 27 672 280 288 t 0 0 0 0 0 115 147 40 24 23 10 28 11 8 12 26 114 174 131
oligos_7nt_mkv4_m5_shift4 (oligos_7nt_mkv4_m5)				; oligos_6nt_mkv3_m1 versus oligos_7nt_mkv4_m5; m=2/4; ncol2=15; w=-1; offset=-1; strand=D; shift=4; score=0.764246; ----cscCCCCACCCCCss ; cor=; Ncor= a 0 0 0 0 135 150 58 44 44 35 24 672 32 19 44 47 56 189 120 c 0 0 0 0 449 304 644 808 818 883 891 13 850 857 803 794 761 285 442 g 0 0 0 0 196 344 181 64 61 25 24 209 56 43 61 64 83 318 265 t 0 0 0 0 176 158 73 40 33 13 17 62 18 37 48 51 56 164 129
oligos_7nt_mkv4_m1_shift3 (oligos_7nt_mkv4_m1)				; oligos_6nt_mkv3_m1 versus oligos_7nt_mkv4_m1; m=3/4; ncol2=21; w=-2; offset=-2; strand=D; shift=3; score=0.618476; ---scgGCCCCGCCCCCkc ; cor=; Ncor= a 0 0 0 136 254 164 70 27 45 67 16 45 21 9 28 81 61 152 101 c 0 0 0 670 553 320 136 1186 1156 1190 1244 31 1226 1245 1111 1093 959 316 825 g 0 0 0 334 277 763 1050 61 64 57 44 1208 59 58 81 88 181 383 266 t 0 0 0 196 252 89 80 62 71 22 32 52 30 24 116 74 135 485 144
oligos_7nt_mkv4_m4_rc_shift0 (oligos_7nt_mkv4_m4_rc)				; oligos_6nt_mkv3_m1 versus oligos_7nt_mkv4_m4_rc; m=4/4; ncol2=16; w=-5; offset=-5; strand=R; shift=0; score=0.474818; sscyCGGCTCCGCCcc--- ; cor=; Ncor= a 70 72 39 41 47 41 16 5 22 9 11 16 10 12 64 84 0 0 0 c 257 279 411 167 476 72 61 596 116 584 570 18 578 507 311 316 0 0 0 g 211 166 107 126 45 486 532 10 43 24 29 559 26 54 131 143 0 0 0 t 85 106 66 289 55 24 14 12 442 6 13 30 9 50 117 80 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m1_shift3 (oligos_7nt_mkv4_m1)				; oligos_7nt_mkv4_m1; m=0 (reference); ncol1=21; shift=3; ncol=24; ---scgGCCCCGCCCCCkcccsss ; Alignment reference a 0 0 0 136 254 164 70 27 45 67 16 45 21 9 28 81 61 152 101 103 94 112 122 157 c 0 0 0 670 553 320 136 1186 1156 1190 1244 31 1226 1245 1111 1093 959 316 825 870 837 713 577 574 g 0 0 0 334 277 763 1050 61 64 57 44 1208 59 58 81 88 181 383 266 234 258 335 436 421 t 0 0 0 196 252 89 80 62 71 22 32 52 30 24 116 74 135 485 144 129 147 176 201 184
oligos_7nt_mkv4_m1_shift3 (oligos_7nt_mkv4_m1)				; oligos_7nt_mkv4_m1 versus oligos_7nt_mkv4_m1; m=1/4; ncol2=21; w=0; offset=0; strand=D; shift=3; score= 1; ---scgGCCCCGCCCCCkcccsss ; cor=; Ncor= a 0 0 0 136 254 164 70 27 45 67 16 45 21 9 28 81 61 152 101 103 94 112 122 157 c 0 0 0 670 553 320 136 1186 1156 1190 1244 31 1226 1245 1111 1093 959 316 825 870 837 713 577 574 g 0 0 0 334 277 763 1050 61 64 57 44 1208 59 58 81 88 181 383 266 234 258 335 436 421 t 0 0 0 196 252 89 80 62 71 22 32 52 30 24 116 74 135 485 144 129 147 176 201 184
oligos_6nt_mkv3_m1_shift5 (oligos_6nt_mkv3_m1)				; oligos_7nt_mkv4_m1 versus oligos_6nt_mkv3_m1; m=2/4; ncol2=14; w=0; offset=2; strand=D; shift=5; score=0.618476; -----sgCCCCGCCCCgss----- ; cor=; Ncor= a 0 0 0 0 0 159 100 16 29 17 24 21 9 10 16 29 46 118 127 0 0 0 0 0 c 0 0 0 0 0 373 244 910 930 945 952 3 989 964 963 940 190 450 476 0 0 0 0 0 g 0 0 0 0 0 375 531 56 39 37 36 970 13 40 31 27 672 280 288 0 0 0 0 0 t 0 0 0 0 0 115 147 40 24 23 10 28 11 8 12 26 114 174 131 0 0 0 0 0
oligos_7nt_mkv4_m5_shift4 (oligos_7nt_mkv4_m5)				; oligos_7nt_mkv4_m1 versus oligos_7nt_mkv4_m5; m=3/4; ncol2=15; w=0; offset=1; strand=D; shift=4; score=0.603256; ----cscCCCCACCCCCss----- ; cor=; Ncor= a 0 0 0 0 135 150 58 44 44 35 24 672 32 19 44 47 56 189 120 0 0 0 0 0 c 0 0 0 0 449 304 644 808 818 883 891 13 850 857 803 794 761 285 442 0 0 0 0 0 g 0 0 0 0 196 344 181 64 61 25 24 209 56 43 61 64 83 318 265 0 0 0 0 0 t 0 0 0 0 176 158 73 40 33 13 17 62 18 37 48 51 56 164 129 0 0 0 0 0
oligos_7nt_mkv4_m4_rc_shift0 (oligos_7nt_mkv4_m4_rc)				; oligos_7nt_mkv4_m1 versus oligos_7nt_mkv4_m4_rc; m=4/4; ncol2=16; w=-3; offset=-3; strand=R; shift=0; score=0.461737; sscyCGGCTCCGCCcc-------- ; cor=; Ncor= a 70 72 39 41 47 41 16 5 22 9 11 16 10 12 64 84 0 0 0 0 0 0 0 0 c 257 279 411 167 476 72 61 596 116 584 570 18 578 507 311 316 0 0 0 0 0 0 0 0 g 211 166 107 126 45 486 532 10 43 24 29 559 26 54 131 143 0 0 0 0 0 0 0 0 t 85 106 66 289 55 24 14 12 442 6 13 30 9 50 117 80 0 0 0 0 0 0 0 0