RSAT - peak-motifs result

Analysis: Peakmotifstreatdmsomerged (19/12/2025 09:10)

peak-motifs  -v 1 -title Peakmotifstreatdmsomerged -i $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -source getfasta -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa

motif discovery
oligos_6nt_mkv3	oligos_6nt_mkv3_m1 assembly: ccccgccccg (sig=72.43; e-value=3.7e-73) RC: cggggcgggg oligos_6nt_mkv3_m2 assembly: acccagccaatcat (sig=46.14; e-value=7.2e-47) RC: atgattggctgggt oligos_6nt_mkv3_m3 assembly: aaccaatcat (sig=46.14; e-value=7.2e-47) RC: atgattggtt oligos_6nt_mkv3_m4 assembly: aatggaat (sig=22.28; e-value=5.2e-23) RC: attccatt oligos_6nt_mkv3_m5 assembly: gcgtgcgcacgc (sig=18.59; e-value=2.6e-19) RC: gcgtgcgcacgc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv4	oligos_7nt_mkv4_m1 assembly: ggccccgccccctcccc (sig=50.22; e-value=6e-51) RC: ggggagggggcggggcc oligos_7nt_mkv4_m2 assembly: aatcgaatggaatc (sig=38.70; e-value=2e-39) RC: gattccattcgatt oligos_7nt_mkv4_m3 assembly: cagccaatcgg (sig=20.96; e-value=1.1e-21) RC: ccgattggctg oligos_7nt_mkv4_m4 assembly: ggcggagccgag (sig=13.18; e-value=6.6e-14) RC: ctcggctccgcc oligos_7nt_mkv4_m5 assembly: cccccaccccc (sig=10.06; e-value=8.7e-11) RC: gggggtggggg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv3_m1	k-mer sig=72.43; evalue=3.7e-73 sgCCCCGCCCCgcc GGCGGGGCGGGGCS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 425 (20.15%) Max nb of predicted sites per peak: 8  (chromosome_GRCh38_19_1_58617616_1:29811581-29811879()) Mean nb of predicted sites per peak: 1.73	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv3_m2	k-mer sig=46.14; evalue=7.2e-47 mvhcycAgCCAATcAgmr YKCTGATTGGCTGRGDBK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 222 (10.53%) Max nb of predicted sites per peak: 5  (chromosome_GRCh38_20_1_64444167_1:46788897-46789082()) Mean nb of predicted sites per peak: 1.26	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv3_m3	k-mer sig=46.14; evalue=7.2e-47 whAACCAATcAkmr YKMTGATTGGTTDW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 236 (11.19%) Max nb of predicted sites per peak: 5  (chromosome_GRCh38_20_1_64444167_1:46788897-46789082()) Mean nb of predicted sites per peak: 1.35	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv3_m4	k-mer sig=22.28; evalue=5.2e-23 sgAATgGAATsr YSATTCCATTCS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 100 (4.74%) Max nb of predicted sites per peak: 79  (chromosome_GRCh38_16_1_90338345_1:46397350-46398512()) Mean nb of predicted sites per peak: 12.84	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv3_m5	k-mer sig=18.59; evalue=2.6e-19 gcgcgTGCGCAcgcgc GCGCGTGCGCACGCGC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 141 (6.69%) Max nb of predicted sites per peak: 12  (chromosome_GRCh38_3_1_198295559_1:129893649-129893816()) Mean nb of predicted sites per peak: 3.06	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv4_m1	k-mer sig=50.22; evalue=6e-51 ccggCCCCGCCccctccccss SSGGGGAGGGGGCGGGGCCGG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 523 (24.80%) Max nb of predicted sites per peak: 13  (chromosome_GRCh38_19_1_58617616_1:29811581-29811879()) Mean nb of predicted sites per peak: 2.08	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv4_m2	k-mer sig=38.70; evalue=2e-39 rkAATsgAATgGAATsrW WYSATTCCATTCSATTMY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 89 (4.22%) Max nb of predicted sites per peak: 110  (chromosome_GRCh38_16_1_90338345_1:46397350-46398512()) Mean nb of predicted sites per peak: 19.03	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv4_m3	k-mer sig=20.96; evalue=1.1e-21 mtcAGCCAATcrgar YTCYGATTGGCTGAK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 258 (12.23%) Max nb of predicted sites per peak: 5  (chromosome_GRCh38_17_1_83257441_1:82022912-82023296()) Mean nb of predicted sites per peak: 1.34	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv4_m4	k-mer sig=13.18; evalue=6.6e-14 gggGCGGAGCcgaggs SCCTCGGCTCCGCCCC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 312 (14.79%) Max nb of predicted sites per peak: 7  (chromosome_GRCh38_2_1_242193529_1:112054529-112054780()) Mean nb of predicted sites per peak: 1.47	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv4_m5	k-mer sig=10.06; evalue=8.7e-11 cscCCCCACCCccrc GYGGGGGTGGGGGSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 280 (13.28%) Max nb of predicted sites per peak: 5  (chromosome_GRCh38_19_1_58617616_1:1249404-1249893()) Mean nb of predicted sites per peak: 1.33	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Predicted sites on test peaks (all motifs)

[tab] [bed]

Command:  peak-motifs  -v 1 -title Peakmotifstreatdmsomerged -i $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -source getfasta -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa

Warning: Not a single pattern was found in file tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/12/19/peak-motifs.2025-12-19.090918_2025-12-19.090918_0x1wFa/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab