/var/www/html/rsat/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.115413_2025-12-19.115413_FZ7H1y/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.115413_2025-12-19.115413_FZ7H1y/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.115413_2025-12-19.115413_FZ7H1y/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.115413_2025-12-19.115413_FZ7H1y/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.115413_2025-12-19.115413_FZ7H1y/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.115413_2025-12-19.115413_FZ7H1y/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.115413_2025-12-19.115413_FZ7H1y/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.115413_2025-12-19.115413_FZ7H1y/results/discovered_motifs/peak-motifs_motifs_disco_compa
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.115413_2025-12-19.115413_FZ7H1y/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.115413_2025-12-19.115413_FZ7H1y/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.115413_2025-12-19.115413_FZ7H1y/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.115413_2025-12-19.115413_FZ7H1y/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	14	48
		file1	2	12	16
		file1	3	11	41
		file1	4	14	8
		file1	5	11	40
		file1	6	15	47
		file1	7	14	11
		file1	8	11	41
		file1	9	20	2
		file1	10	12	63
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.115413_2025-12-19.115413_FZ7H1y/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		14		48
		file2		2		12		16
		file2		3		11		41
		file2		4		14		8
		file2		5		11		40
		file2		6		15		47
		file2		7		14		11
		file2		8		11		41
		file2		9		20		2
		file2		10		12		63
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m2 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m1 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv1_m3 oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m3 oligos_6nt_mkv1_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv1_m4 oligos_7nt_mkv1_m4 oligos_7nt_mkv1_m4 oligos_7nt_mkv1_m4 1.000 1.000 20 20 20 20 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m5 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m3 oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m5 oligos_6nt_mkv1_m5 oligos_6nt_mkv1_m5 oligos_6nt_mkv1_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m3 oligos_6nt_mkv1_m3 oligos_6nt_mkv1_m3 oligos_6nt_mkv1_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m1 oligos_6nt_mkv1_m1 oligos_6nt_mkv1_m1 oligos_6nt_mkv1_m1 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m4 oligos_6nt_mkv1_m4 oligos_6nt_mkv1_m4 oligos_6nt_mkv1_m4 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m2 oligos_6nt_mkv1_m2 oligos_6nt_mkv1_m2 oligos_6nt_mkv1_m2 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m1 oligos_7nt_mkv1_m1 oligos_6nt_mkv1_m1 oligos_7nt_mkv1_m1 0.999 0.932 14 15 14 15 0.9333 1.0000 0.9333 R 0
oligos_7nt_mkv1_m1 oligos_6nt_mkv1_m1 oligos_7nt_mkv1_m1 oligos_6nt_mkv1_m1 0.999 0.932 15 14 14 15 0.9333 0.9333 1.0000 R 1
oligos_6nt_mkv1_m2 oligos_7nt_mkv1_m2 oligos_6nt_mkv1_m2 oligos_7nt_mkv1_m2 0.974 0.835 12 14 12 14 0.8571 1.0000 0.8571 R -1
oligos_7nt_mkv1_m2 oligos_6nt_mkv1_m2 oligos_7nt_mkv1_m2 oligos_6nt_mkv1_m2 0.974 0.835 14 12 12 14 0.8571 0.8571 1.0000 R 1
oligos_7nt_mkv1_m4 oligos_6nt_mkv1_m4 oligos_7nt_mkv1_m4 oligos_6nt_mkv1_m4 0.976 0.683 20 14 14 20 0.7000 0.7000 1.0000 D 3
oligos_6nt_mkv1_m4 oligos_7nt_mkv1_m4 oligos_6nt_mkv1_m4 oligos_7nt_mkv1_m4 0.976 0.683 14 20 14 20 0.7000 1.0000 0.7000 D -3
oligos_6nt_mkv1_m1 oligos_6nt_mkv1_m2 oligos_6nt_mkv1_m1 oligos_6nt_mkv1_m2 0.725 0.622 14 12 12 14 0.8571 0.8571 1.0000 D 2
oligos_6nt_mkv1_m2 oligos_6nt_mkv1_m1 oligos_6nt_mkv1_m2 oligos_6nt_mkv1_m1 0.725 0.622 12 14 12 14 0.8571 1.0000 0.8571 D -2
oligos_6nt_mkv1_m2 oligos_7nt_mkv1_m1 oligos_6nt_mkv1_m2 oligos_7nt_mkv1_m1 0.712 0.570 12 15 12 15 0.8000 1.0000 0.8000 R -2
oligos_7nt_mkv1_m1 oligos_6nt_mkv1_m2 oligos_7nt_mkv1_m1 oligos_6nt_mkv1_m2 0.712 0.570 15 12 12 15 0.8000 0.8000 1.0000 R 1 
 Host name	rsat
 Job started	2025-12-19.115429
 Job done	2025-12-19.115434
 Seconds	0.25
	user	0.25
	system	0.18
	cuser	3.81
;	csystem	0.7