peak-motifs HNF4A-chipseq

motif discovery

oligos_6nt_mkv4

oligos_6nt_mkv4_m1	assembly: agcggagc (sig=69.01; e-value=9.8e-70)	RC: gctccgct
oligos_6nt_mkv4_m2	assembly: cgagcg (sig=49.43; e-value=3.7e-50)	RC: cgctcg
oligos_6nt_mkv4_m3	assembly: cgcctcg (sig=48.26; e-value=5.5e-49)	RC: cgaggcg
oligos_6nt_mkv4_m4	assembly: gcggggcg (sig=45.07; e-value=8.5e-46)	RC: cgccccgc
oligos_6nt_mkv4_m5	assembly: cgctgcg (sig=41.73; e-value=1.9e-42)	RC: cgcagcg

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_6nt

positions_6nt_m1	assembly: cgtcgc (sig=0.82; e-value=0.15)	RC: gcgacg
positions_6nt_m2	assembly: atgcgg (sig=0.25; e-value=0.56)	RC: ccgcat
positions_6nt_m3	: (sig=; e-value=1)	RC:
positions_6nt_m4	: (sig=; e-value=1)	RC:
positions_6nt_m5	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

oligos_7nt_mkv5

oligos_7nt_mkv5_m1	assembly: ccccgcccccg (sig=60.66; e-value=2.2e-61)	RC: cgggggcgggg
oligos_7nt_mkv5_m2	assembly: tgcgcctgcg (sig=39.98; e-value=1e-40)	RC: cgcaggcgca
oligos_7nt_mkv5_m3	assembly: cgccctc (sig=36.16; e-value=6.9e-37)	RC: gagggcg
oligos_7nt_mkv5_m4	assembly: tgactca (sig=34.73; e-value=1.9e-35)	RC: tgagtca
oligos_7nt_mkv5_m5	assembly: cacttccg (sig=34.28; e-value=5.2e-35)	RC: cggaagtg

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_7nt

positions_7nt_m1	assembly: ctgcgtc (sig=1.51; e-value=0.031)	RC: gacgcag
positions_7nt_m2	assembly: aatgtta (sig=0.38; e-value=0.42)	RC: taacatt
positions_7nt_m3	: (sig=; e-value=1)	RC:
positions_7nt_m4	: (sig=; e-value=1)	RC:
positions_7nt_m5	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

Motif discovery

Motif 1 oligos_6nt_mkv4_m1

k-mer sig=69.01; evalue=9.8e-70

gsagCGGAGCss

SSGCTCCGCTSC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2096 (10.86%)
Max nb of predicted sites per peak: 5
(chr19:4305856-4306434)
Mean nb of predicted sites per peak: 1.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv4_m2

k-mer sig=49.43; evalue=3.7e-50

sgCGAGCGcg

CGCGCTCGCS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2142 (11.10%)
Max nb of predicted sites per peak: 18
(chr10:81126501-81126852)
Mean nb of predicted sites per peak: 1.90

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv4_m3

k-mer sig=48.26; evalue=5.5e-49

ssCGCCTCgss

SSCGAGGCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2232 (11.56%)
Max nb of predicted sites per peak: 6
(chr3:133544086-133544998)
Mean nb of predicted sites per peak: 1.30

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv4_m4

k-mer sig=45.07; evalue=8.5e-46

sgGCGGGGCGsg

CSCGCCCCGCCS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2789 (14.45%)
Max nb of predicted sites per peak: 10
(chr11:20542428-20542939)
Mean nb of predicted sites per peak: 1.62

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv4_m5

k-mer sig=41.73; evalue=1.9e-42

ssCGCTGCgss

SSCGCAGCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2092 (10.84%)
Max nb of predicted sites per peak: 10
(chr8:22593521-22594072)
Mean nb of predicted sites per peak: 1.96

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=0.82; evalue=0.15

sgCGTCGCsg

CSGCGACGCS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1293 (6.70%)
Max nb of predicted sites per peak: 6
(chr7:19561930-19562440)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=0.25; evalue=0.56

vkATGCGGhg

CDCCGCATMB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 509 (2.64%)
Max nb of predicted sites per peak: 2
(chr8:34689238-34690084)
Mean nb of predicted sites per peak: 1.03

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_mkv5_m1

k-mer sig=60.66; evalue=2.2e-61

sscCCCGCCcCCgcc

GGCGGGGGCGGGGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3572 (18.50%)
Max nb of predicted sites per peak: 18
(chr11:6475396-6476342)
Mean nb of predicted sites per peak: 2.31

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_mkv5_m2

k-mer sig=39.98; evalue=1e-40

sstGCGCcTGCGcs

SGCGCAGGCGCASS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2100 (10.88%)
Max nb of predicted sites per peak: 16
(chr10:81126501-81126852)
Mean nb of predicted sites per peak: 1.64

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_mkv5_m3

k-mer sig=36.16; evalue=6.9e-37

ssCGCcCTCss

SSGAGGGCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2265 (11.73%)
Max nb of predicted sites per peak: 14
(chr10:81126501-81126852)
Mean nb of predicted sites per peak: 1.38

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv5_m4

k-mer sig=34.73; evalue=1.9e-35

wvTGACTCAsw

WSTGAGTCABW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1045 (5.41%)
Max nb of predicted sites per peak: 4
(chr7:49601477-49602072)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv5_m5

k-mer sig=34.28; evalue=5.2e-35

syCACTTCCGsy

RSCGGAAGTGRS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1442 (7.47%)
Max nb of predicted sites per peak: 3
(chr9:73113175-73113701)
Mean nb of predicted sites per peak: 1.13

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 positions_7nt_m1

k-mer sig=1.51; evalue=0.031

ssCTGCGTCss

SSGACGCAGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 785 (4.07%)
Max nb of predicted sites per peak: 2
(chrX:159255754-159256039)
Mean nb of predicted sites per peak: 1.04

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 positions_7nt_m2

k-mer sig=0.38; evalue=0.42

waAATGTTAww

WWTAACATTTW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1189 (6.16%)
Max nb of predicted sites per peak: 4
(chr16:91802684-91802864)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: HNF4A-chipseq (19/12/2025 15:14)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results