peak-motifs sff

Motif discovery

Motif 1 oligos_6nt_mkv4_m1

k-mer sig=11.05; evalue=8.9e-12

grCAGGGCrg

CYGCCCTGYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grCAGGGCrg

THAP1 MA0597.3 D 8 0.8000 0.881 0.705 NA NA

YY2 MA0748.3 D 7 0.7000 0.726 0.509 NA NA

Nr1h3 MA2337.1 D 6 0.6000 0.801 0.480 NA NA

Total matches= 23 (20 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 433 (20.60%)
Max nb of predicted sites per peak: 4
(chr3:177130563-177131472)
Mean nb of predicted sites per peak: 1.24

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv4_m2

k-mer sig=9.78; evalue=1.7e-10

ssCGGAGCyg

CRGCTCCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCGGAGCyg

ZNF331 MA1726.2 D 10 1.0000 0.708 0.708 NA NA

ZBED4 MA2328.1 R 9 0.8182 0.817 0.668 NA NA

ZNF610 MA1713.2 R 7 0.5385 0.885 0.477 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 125 (5.95%)
Max nb of predicted sites per peak: 3
(chr5:74161779-74162368)
Mean nb of predicted sites per peak: 1.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv4_m3

k-mer sig=6.20; evalue=6.3e-07

wmACCcCCAcmY

RKGTGGGGGTKW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wmACCcCCAcmY

SP8 MA0747.2 D 11 0.9167 0.757 0.694 NA NA

ZNF740 MA0753.3 D 10 0.8333 0.825 0.688 NA NA

Wt1 MA1627.2 D 10 0.8333 0.785 0.654 NA NA

Total matches= 33 (30 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1209 (57.52%)
Max nb of predicted sites per peak: 15
(chr17:15540401-15541119)
Mean nb of predicted sites per peak: 3.48

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv4_m4

k-mer sig=4.77; evalue=1.7e-05

yyCCCCGCcc

GGGCGGGGRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyCCCCGCcc

KLF15 MA1513.2 D 8 0.8000 0.943 0.754 NA NA

KLF3 MA1516.2 D 10 1.0000 0.746 0.746 NA NA

KLF7 MA1959.2 R 8 0.8000 0.921 0.737 NA NA

Total matches= 41 (38 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 815 (38.77%)
Max nb of predicted sites per peak: 7
(chr2:43523949-43525665)
Mean nb of predicted sites per peak: 1.76

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv4_m5

k-mer sig=3.56; evalue=0.00028

kacTggGmAgh

DCTKCCCAGTM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kacTggGmAgh

ZNF416 MA1979.2 D 9 0.7500 0.889 0.667 NA NA

Zfp809 MA2125.1 R 9 0.8182 0.775 0.634 NA NA

THAP1 MA0597.3 D 8 0.7273 0.735 0.534 NA NA

Total matches= 13 (10 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1182 (56.23%)
Max nb of predicted sites per peak: 10
(chr14:20777395-20778858)
Mean nb of predicted sites per peak: 3.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=41.21; evalue=6.2e-42

sccycTscccggccccgmccccgT

ACGGGGKCGGGGCCGGGSAGRGGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sccycTscccggccccgmccccgT

PATZ1 MA1961.2 R 11 0.4583 0.875 0.401 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1333 (63.42%)
Max nb of predicted sites per peak: 198
(chr2:33141275-33141705)
Mean nb of predicted sites per peak: 3.71

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=41.21; evalue=6.2e-42

kggggcgggkcmgccccgccgcyc

GRGCGGCGGGGCKGMCCCGCCCCM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kggggcgggkcmgccccgccgcyc

PATZ1 MA1961.2 D 11 0.4583 0.892 0.409 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1107 (52.66%)
Max nb of predicted sites per peak: 15
(chr2:43523949-43525665)
Mean nb of predicted sites per peak: 2.80

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=41.21; evalue=6.2e-42

ggccgggggcggggccgggcgcgg

CCGCGCCCGGCCCCGCCCCCGGCC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ggccgggggcggggccgggcgcgg

PATZ1 MA1961.2 D 11 0.4583 0.934 0.428 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 433 (20.60%)
Max nb of predicted sites per peak: 11
(chr20:30605766-30606363)
Mean nb of predicted sites per peak: 1.48

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=41.21; evalue=6.2e-42

cyccccTccccgccccggcccccc

GGGGGGCCGGGGCGGGGAGGGGRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyccccTccccgccccggcccccc

PATZ1 MA1961.2 R 11 0.4583 0.919 0.421 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 462 (21.98%)
Max nb of predicted sites per peak: 305
(chr2:33141275-33141705)
Mean nb of predicted sites per peak: 2.53

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

k-mer sig=41.21; evalue=6.2e-42

sggckcggcccCgcccccggccms

SKGGCCGGGGGCGGGGCCGMGCCS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sggckcggcccCgcccccggccms

PATZ1 MA1961.2 R 11 0.4583 0.917 0.420 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 986 (46.91%)
Max nb of predicted sites per peak: 9
(chr20:30605766-30606363)
Mean nb of predicted sites per peak: 2.03

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv5_m1

k-mer sig=6.31; evalue=4.9e-07

cmcCCCGcCCgg

CCGGGCGGGGKG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cmcCCCGcCCgg

PATZ1 MA1961.2 R 11 0.9167 0.890 0.816 NA NA

KLF5 MA0599.1 D 10 0.8333 0.845 0.704 NA NA

KLF12 MA0742.2 R 9 0.7500 0.926 0.695 NA NA

Total matches= 30 (27 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1237 (58.85%)
Max nb of predicted sites per peak: 17
(chr14:65361553-65362780)
Mean nb of predicted sites per peak: 3.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv5_m2

k-mer sig=6.23; evalue=5.9e-07

csCCGGCGCys

SRGCGCCGGSG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor csCCGGCGCys

ZNF417 MA1727.2 D 7 0.6364 0.829 0.527 NA NA

Zfp961 MA2126.1 R 8 0.7273 0.720 0.523 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 285 (13.56%)
Max nb of predicted sites per peak: 7
(chr10:135523417-135524290)
Mean nb of predicted sites per peak: 1.37

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv5_m3

k-mer sig=6.07; evalue=8.5e-07

ssCGCCCCCwm

KWGGGGGCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCGCCCCCwm

EGR1 MA0162.5 D 10 0.9091 0.806 0.733 NA NA

Wt1 MA1627.2 D 10 0.9091 0.768 0.698 NA NA

ZNF740 MA0753.3 D 10 0.9091 0.753 0.684 NA NA

Total matches= 38 (35 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 402 (19.12%)
Max nb of predicted sites per peak: 6
(chr20:30605766-30606363)
Mean nb of predicted sites per peak: 1.28

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv5_m4

k-mer sig=3.65; evalue=0.00022

kgyrgTggcsk

MSGCCACYRCM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kgyrgTggcsk

ZBTB7C MA0695.2 R 8 0.7273 0.745 0.542 NA NA

YY2 MA0748.3 D 7 0.6364 0.734 0.467 NA NA

KLF7 MA1959.2 D 7 0.5833 0.724 0.422 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 940 (44.72%)
Max nb of predicted sites per peak: 4
(chr4:110524214-110525422)
Mean nb of predicted sites per peak: 1.27

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv5_m5

k-mer sig=3.56; evalue=0.00028

yycgCAGCCgCcy

RGGCGGCTGCGRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yycgCAGCCgCcy

ZNF93 MA1721.2 R 12 0.8000 0.767 0.613 NA NA

NHLH1 MA0048.3 D 9 0.6923 0.777 0.538 NA NA

ZNF610 MA1713.2 D 9 0.6429 0.741 0.476 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 956 (45.48%)
Max nb of predicted sites per peak: 15
(chr6:151711839-151713073)
Mean nb of predicted sites per peak: 2.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

k-mer sig=22.26; evalue=5.5e-23

scgccyckgccccgccsccscgTc

GACGSGGSGGCGGGGCMGRGGCGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scgccyckgccccgccsccscgTc

PATZ1 MA1961.2 R 11 0.4583 0.916 0.420 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1381 (65.70%)
Max nb of predicted sites per peak: 13
(chr5:71089703-71090309)
Mean nb of predicted sites per peak: 3.55

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

k-mer sig=22.26; evalue=5.5e-23

cyccccTccccgcccccgcsgcyy

RRGCSGCGGGGGCGGGGAGGGGRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyccccTccccgcccccgcsgcyy

PATZ1 MA1961.2 R 11 0.4583 0.906 0.415 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 421 (20.03%)
Max nb of predicted sites per peak: 229
(chr2:33141275-33141705)
Mean nb of predicted sites per peak: 2.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 positions_7nt_m3

k-mer sig=16.87; evalue=1.3e-17

gmgccTCTgCcCggCCgCCmcywc

GWRGKGGCGGCCGGGCAGAGGCKC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gmgccTCTgCcCggCCgCCmcywc

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1143 (54.38%)
Max nb of predicted sites per peak: 16
(chr7:129115434-129117073)
Mean nb of predicted sites per peak: 5.87

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 positions_7nt_m4

k-mer sig=22.26; evalue=5.5e-23

ccgggcgGgggcTgmcccccmccy

RGGKGGGGGKCAGCCCCCGCCCGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccgggcgGgggcTgmcccccmccy

PATZ1 MA1961.2 D 11 0.4583 0.883 0.405 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 951 (45.24%)
Max nb of predicted sites per peak: 14
(chr14:65361553-65362780)
Mean nb of predicted sites per peak: 2.63

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 positions_7nt_m5

k-mer sig=22.26; evalue=5.5e-23

ccggcccggcccgcccccgccgcs

SGCGGCGGGGGCGGGCCGGGCCGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccggcccggcccgcccccgccgcs

PATZ1 MA1961.2 R 11 0.4583 0.906 0.415 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 375 (17.84%)
Max nb of predicted sites per peak: 183
(chr2:33141275-33141705)
Mean nb of predicted sites per peak: 2.55

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus JASPAR2024_CORE_vertebrates_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: sff (19/12/2025 15:16)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sccycTscccggccccgmccccgT

PATZ1 MA1961.2 R 11 0.4583 0.875 0.401 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kggggcgggkcmgccccgccgcyc

PATZ1 MA1961.2 D 11 0.4583 0.892 0.409 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ggccgggggcggggccgggcgcgg

PATZ1 MA1961.2 D 11 0.4583 0.934 0.428 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyccccTccccgccccggcccccc

PATZ1 MA1961.2 R 11 0.4583 0.919 0.421 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sggckcggcccCgcccccggccms

PATZ1 MA1961.2 R 11 0.4583 0.917 0.420 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor csCCGGCGCys

ZNF417 MA1727.2 D 7 0.6364 0.829 0.527 NA NA

Zfp961 MA2126.1 R 8 0.7273 0.720 0.523 NA NA

Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scgccyckgccccgccsccscgTc

PATZ1 MA1961.2 R 11 0.4583 0.916 0.420 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyccccTccccgcccccgcsgcyy

PATZ1 MA1961.2 R 11 0.4583 0.906 0.415 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gmgccTCTgCcCggCCgCCmcywc

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccgggcgGgggcTgmcccccmccy

PATZ1 MA1961.2 D 11 0.4583 0.883 0.405 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccggcccggcccgcccccgccgcs

PATZ1 MA1961.2 R 11 0.4583 0.906 0.415 NA NA

Total matches= 1

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: sff (19/12/2025 15:16)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor sccycTscccggccccgmccccgT PATZ1 MA1961.2 R 11 0.4583 0.875 0.401 NA NA Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor kggggcgggkcmgccccgccgcyc PATZ1 MA1961.2 D 11 0.4583 0.892 0.409 NA NA Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ggccgggggcggggccgggcgcgg PATZ1 MA1961.2 D 11 0.4583 0.934 0.428 NA NA Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor cyccccTccccgccccggcccccc PATZ1 MA1961.2 R 11 0.4583 0.919 0.421 NA NA Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor sggckcggcccCgcccccggccms PATZ1 MA1961.2 R 11 0.4583 0.917 0.420 NA NA Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor csCCGGCGCys ZNF417 MA1727.2 D 7 0.6364 0.829 0.527 NA NA Zfp961 MA2126.1 R 8 0.7273 0.720 0.523 NA NA Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor scgccyckgccccgccsccscgTc PATZ1 MA1961.2 R 11 0.4583 0.916 0.420 NA NA Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor cyccccTccccgcccccgcsgcyy PATZ1 MA1961.2 R 11 0.4583 0.906 0.415 NA NA Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor gmgccTCTgCcCggCCgCCmcywc Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ccgggcgGgggcTgmcccccmccy PATZ1 MA1961.2 D 11 0.4583 0.883 0.405 NA NA Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ccggcccggcccgcccccgccgcs PATZ1 MA1961.2 R 11 0.4583 0.906 0.415 NA NA Total matches= 1

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sccycTscccggccccgmccccgT

PATZ1 MA1961.2 R 11 0.4583 0.875 0.401 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kggggcgggkcmgccccgccgcyc

PATZ1 MA1961.2 D 11 0.4583 0.892 0.409 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ggccgggggcggggccgggcgcgg

PATZ1 MA1961.2 D 11 0.4583 0.934 0.428 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyccccTccccgccccggcccccc

PATZ1 MA1961.2 R 11 0.4583 0.919 0.421 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sggckcggcccCgcccccggccms

PATZ1 MA1961.2 R 11 0.4583 0.917 0.420 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor csCCGGCGCys

ZNF417 MA1727.2 D 7 0.6364 0.829 0.527 NA NA

Zfp961 MA2126.1 R 8 0.7273 0.720 0.523 NA NA

Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scgccyckgccccgccsccscgTc

PATZ1 MA1961.2 R 11 0.4583 0.916 0.420 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyccccTccccgcccccgcsgcyy

PATZ1 MA1961.2 R 11 0.4583 0.906 0.415 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gmgccTCTgCcCggCCgCCmcywc

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccgggcgGgggcTgmcccccmccy

PATZ1 MA1961.2 D 11 0.4583 0.883 0.405 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccggcccggcccgcccccgccgcs

PATZ1 MA1961.2 R 11 0.4583 0.906 0.415 NA NA

Total matches= 1