position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.151950_2025-12-19.151950_Y26lkY/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title MITF_K243R_top5000 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.151950_2025-12-19.151950_Y26lkY/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.151950_2025-12-19.151950_Y26lkY/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.151950_2025-12-19.151950_Y26lkY/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 4939 Sum of sequence lengths 1452910 Min sequence length 0 Max sequence length 1000 Average sequence length 294 Possible positions 1452910 Oligonucleotide statistics: Total occurrences 1225468 Position interval parameters: Position interval 20 Number of windows 50 Total positions 1452910 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 20 375 2 -24 [-479,-460] -469.5 21 402 3 -23 [-459,-440] -449.5 26 470 4 -22 [-439,-420] -429.5 34 584 5 -21 [-419,-400] -409.5 40 727 6 -20 [-399,-380] -389.5 53 920 7 -19 [-379,-360] -369.5 71 1258 8 -18 [-359,-340] -349.5 103 1726 9 -17 [-339,-320] -329.5 136 2395 10 -16 [-319,-300] -309.5 188 3276 11 -15 [-299,-280] -289.5 257 4481 12 -14 [-279,-260] -269.5 336 5926 13 -13 [-259,-240] -249.5 445 7867 14 -12 [-239,-220] -229.5 600 10445 15 -11 [-219,-200] -209.5 781 13683 16 -10 [-199,-180] -189.5 1001 17957 17 -9 [-179,-160] -169.5 1337 23273 18 -8 [-159,-140] -149.5 1838 31696 19 -7 [-139,-120] -129.5 2792 45414 20 -6 [-119,-100] -109.5 4049 70138 21 -5 [-99,-80] -89.5 4870 90950 22 -4 [-79,-60] -69.5 4939 98631 23 -3 [-59,-40] -49.5 4939 98780 24 -2 [-39,-20] -29.5 4939 98780 25 -1 [-19,0] -9.5 4939 98780 26 0 [1,20] 10.5 4939 98780 27 1 [21,40] 30.5 4939 98780 28 2 [41,60] 50.5 4939 98780 29 3 [61,80] 70.5 4939 98572 30 4 [81,100] 90.5 4851 90147 31 5 [101,120] 110.5 3998 68844 32 6 [121,140] 130.5 2705 44429 33 7 [141,160] 150.5 1809 31194 34 8 [161,180] 170.5 1306 22947 35 9 [181,200] 190.5 983 17736 36 10 [201,220] 210.5 765 13506 37 11 [221,240] 230.5 591 10299 38 12 [241,260] 250.5 441 7746 39 13 [261,280] 270.5 332 5854 40 14 [281,300] 290.5 251 4406 41 15 [301,320] 310.5 187 3224 42 16 [321,340] 330.5 134 2357 43 17 [341,360] 350.5 102 1698 44 18 [361,380] 370.5 70 1242 45 19 [381,400] 390.5 53 904 46 20 [401,420] 410.5 39 719 47 21 [421,440] 430.5 34 575 48 22 [441,460] 450.5 25 463 49 23 [461,480] 470.5 21 401 50 24 [481,500] 490.5 20 373 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g | g | 273014 | 211.0 | 49 | 5.5e-22 | 2.2e-21 | 20.66 | 1 | 85 | 83 | 113 | 142 | 140 | 189 | 293 | 360 | 449 | 685 | 875 | 1178 | 1559 | 2029 | 2632 | 3522 | 4438 | 6125 | 8688 | 13574 | 17092 | 18570 | 18436 | 18141 | 18101 | 18090 | 18591 | 18459 | 18262 | 16518 | 12960 | 8261 | 6001 | 4453 | 3346 | 2587 | 1973 | 1458 | 1151 | 854 | 674 | 453 | 337 | 300 | 202 | 156 | 129 | 113 | 92 | 95 |
| c | c | 271717 | 160.6 | 49 | 8.6e-14 | 3.4e-13 | 12.46 | 2 | 64 | 86 | 83 | 119 | 142 | 153 | 231 | 330 | 518 | 657 | 875 | 1144 | 1499 | 1944 | 2521 | 3261 | 4428 | 6029 | 8833 | 13313 | 17081 | 18390 | 18264 | 18194 | 18456 | 18340 | 17812 | 18257 | 18224 | 16988 | 12668 | 8599 | 6149 | 4402 | 3429 | 2494 | 1899 | 1557 | 1097 | 844 | 572 | 492 | 328 | 214 | 180 | 146 | 119 | 108 | 87 | 97 |
| a | a | 339747 | 89.8 | 49 | 3.4e-04 | 0.0014 | 2.86 | 3 | 87 | 90 | 126 | 133 | 190 | 233 | 289 | 451 | 610 | 812 | 1114 | 1423 | 1875 | 2404 | 3171 | 4095 | 5426 | 7413 | 10598 | 16777 | 21545 | 23034 | 22922 | 22999 | 23003 | 23357 | 23121 | 22751 | 22971 | 21038 | 16396 | 10214 | 7123 | 5231 | 4018 | 3160 | 2373 | 1892 | 1445 | 1053 | 764 | 510 | 391 | 293 | 199 | 191 | 138 | 101 | 105 | 92 |
| t | t | 340990 | 59.5 | 49 | 1.4e-01 | 0.58 | 0.24 | 4 | 101 | 103 | 107 | 132 | 168 | 223 | 297 | 404 | 584 | 757 | 1054 | 1380 | 1838 | 2457 | 3145 | 4167 | 5361 | 7244 | 10577 | 16623 | 21470 | 22988 | 22858 | 23111 | 23319 | 23074 | 23288 | 23412 | 23264 | 21438 | 16277 | 10496 | 7169 | 5318 | 4098 | 3091 | 2463 | 1778 | 1392 | 1119 | 740 | 597 | 399 | 280 | 227 | 180 | 149 | 107 | 97 | 69 |
Host name rsat Job started 2025-12-19.151958 Job done 2025-12-19.152005 Seconds 6.84 user 6.84 system 0.03 cuser 0 ; csystem 0