/var/www/html/rsat/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.151950_2025-12-19.151950_Y26lkY/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.151950_2025-12-19.151950_Y26lkY/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title MITF_K243R_top5000 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.151950_2025-12-19.151950_Y26lkY/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.151950_2025-12-19.151950_Y26lkY/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.151950_2025-12-19.151950_Y26lkY/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	4939
	Sum of sequence lengths      	1452910
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	294
	Possible positions           	1447971
 Oligonucleotide statistics:
	Total occurrences    	1219303
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	1447971
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	20	375
	2	-24	[-479,-460]	-469.5	21	402
	3	-23	[-459,-440]	-449.5	26	470
	4	-22	[-439,-420]	-429.5	34	584
	5	-21	[-419,-400]	-409.5	40	727
	6	-20	[-399,-380]	-389.5	53	920
	7	-19	[-379,-360]	-369.5	71	1258
	8	-18	[-359,-340]	-349.5	103	1726
	9	-17	[-339,-320]	-329.5	136	2395
	10	-16	[-319,-300]	-309.5	188	3276
	11	-15	[-299,-280]	-289.5	257	4481
	12	-14	[-279,-260]	-269.5	336	5926
	13	-13	[-259,-240]	-249.5	445	7867
	14	-12	[-239,-220]	-229.5	600	10445
	15	-11	[-219,-200]	-209.5	781	13683
	16	-10	[-199,-180]	-189.5	1001	17957
	17	-9	[-179,-160]	-169.5	1337	23273
	18	-8	[-159,-140]	-149.5	1838	31696
	19	-7	[-139,-120]	-129.5	2792	45414
	20	-6	[-119,-100]	-109.5	4049	70138
	21	-5	[-99,-80]	-89.5	4870	90950
	22	-4	[-79,-60]	-69.5	4939	98631
	23	-3	[-59,-40]	-49.5	4939	98780
	24	-2	[-39,-20]	-29.5	4939	98780
	25	-1	[-19,0]	-9.5	4939	98780
	26	0	[1,20]	10.5	4939	98780
	27	1	[21,40]	30.5	4939	98780
	28	2	[41,60]	50.5	4939	98780
	29	3	[61,80]	70.5	4939	98484
	30	4	[81,100]	90.5	4846	89294
	31	5	[101,120]	110.5	3970	67551
	32	6	[121,140]	130.5	2663	43533
	33	7	[141,160]	150.5	1786	30691
	34	8	[161,180]	170.5	1300	22624
	35	9	[181,200]	190.5	977	17518
	36	10	[201,220]	210.5	756	13332
	37	11	[221,240]	230.5	584	10149
	38	12	[241,260]	250.5	438	7637
	39	13	[261,280]	270.5	329	5773
	40	14	[281,300]	290.5	249	4342
	41	15	[301,320]	310.5	186	3171
	42	16	[321,340]	330.5	133	2325
	43	17	[341,360]	350.5	101	1666
	44	18	[361,380]	370.5	68	1225
	45	19	[381,400]	390.5	51	890
	46	20	[401,420]	410.5	39	714
	47	21	[421,440]	430.5	34	566
	48	22	[441,460]	450.5	25	459
	49	23	[461,480]	470.5	20	400
	50	24	[481,500]	490.5	20	353

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
gg gg 75988 186.2 49 7.2e-18 1.1e-16 15.94 1 25 29 34 35 39 52 86 89 102 232 236 333 433 554 767 1042 1256 1774 2426 3897 4723 5198 5171 4992 4946 4990 5250 5134 5031 4524 3541 2226 1661 1247 907 737 591 404 303 225 187 122 90 103 62 42 42 37 29 32
cc cc 74838 165.8 49 1.3e-14 2.1e-13 12.67 2 18 24 20 33 43 37 61 81 162 185 234 317 374 534 715 879 1258 1676 2442 3752 4701 5135 5078 5013 5095 5041 4671 4979 5077 4617 3416 2356 1759 1219 977 703 488 467 297 231 150 151 94 54 48 46 38 32 24 36
cg cg 19191 136.0 49 4.1e-10 6.5e-09 8.18 3 3 2 6 12 4 10 16 25 35 58 72 84 143 141 184 240 334 535 672 971 1195 1286 1293 1258 1278 1244 1241 1225 1253 1093 865 651 457 348 260 173 121 94 88 58 43 32 26 18 9 9 6 4 9 7
aa aa 106560 121.1 49 5.0e-08 7.9e-07 6.10 4 27 27 42 38 67 65 87 157 194 271 367 465 588 748 1020 1237 1699 2356 3226 5377 6777 7280 7213 7280 7233 7554 7297 7022 7208 6564 5044 3073 2201 1551 1229 985 747 632 490 315 240 137 111 71 60 61 40 28 37 22
gc gc 61484 96.7 49 5.8e-05 0.00093 3.03 5 18 12 21 31 27 33 62 87 112 150 216 260 400 482 607 758 1012 1407 2050 3049 3887 4223 4109 4060 4095 4147 4096 4182 4042 3742 2754 1908 1410 1008 777 577 406 338 229 167 143 107 59 59 45 30 22 26 22 20
ag ag 86835 84.0 49 1.4e-03 0.022 1.66 6 30 27 42 40 51 77 91 131 151 204 291 381 484 647 850 1096 1433 1914 2744 4268 5483 5942 5945 5811 5807 5772 5914 5835 5895 5277 4154 2493 1829 1401 1008 841 625 485 357 247 203 131 101 94 55 43 37 40 30 28
gt gt 61293 83.8 49 1.4e-03 0.023 1.64 7 16 20 30 40 38 44 73 87 96 133 200 265 310 481 564 781 999 1286 1918 3007 3796 4174 4103 4091 4266 4023 4229 4183 4222 3687 2918 1809 1324 985 738 562 457 305 288 215 140 88 87 58 46 30 32 21 14 14
tt tt 107300 74.6 49 1.1e-02 0.17 0.76 8 38 39 29 37 50 68 89 108 188 255 317 414 563 772 971 1334 1656 2313 3283 5195 6830 7215 7201 7353 7395 7202 7339 7536 7474 6839 5102 3167 2151 1616 1275 948 760 546 443 333 228 199 118 75 65 51 41 30 31 18
at at 83289 68.3 49 3.5e-02 0.56 0.25 9 20 15 20 31 38 55 60 85 148 184 254 327 476 583 750 1040 1291 1751 2581 4200 5320 5618 5563 5755 5723 5820 5757 5693 5661 5151 3908 2566 1664 1239 956 748 560 400 331 285 172 132 96 77 53 48 30 18 24 12
ga ga 72898 66.9 49 4.5e-02 0.72 0.14 10 26 22 27 36 36 60 72 96 138 169 223 319 411 511 685 935 1162 1640 2276 3586 4642 4941 5022 4971 4767 4907 4993 4936 4929 4389 3491 2142 1521 1154 875 665 488 390 312 233 191 131 93 77 47 53 30 28 27 23
ta ta 69665 60.3 49 1.3e-01 2.1 -0.32 11 15 10 22 19 40 54 56 83 111 151 220 285 362 514 671 811 1111 1449 2161 3446 4424 4760 4630 4809 4775 4873 4800 4754 4767 4377 3318 2053 1374 1092 811 646 481 348 259 206 137 103 72 66 33 41 28 12 14 11
tc tc 72701 58.5 49 1.7e-01 2.6 -0.42 12 18 29 23 26 36 45 58 90 130 158 242 300 405 504 655 918 1159 1554 2280 3568 4534 4842 4940 4919 5019 4924 4919 4940 4894 4587 3369 2316 1574 1138 852 645 562 400 290 241 135 135 87 49 56 29 33 33 26 15
tg tg 89677 57.7 49 1.9e-01 3 -0.47 13 30 25 33 50 42 56 94 122 155 192 272 379 502 662 844 1097 1432 1918 2839 4383 5646 6138 6048 6007 6088 6047 6190 6151 6084 5411 4157 2740 1942 1393 1106 812 617 454 371 318 228 153 111 86 71 59 44 29 25 24
ct ct 87389 54.0 49 2.9e-01 4.6 -0.67 14 22 31 23 28 48 49 78 116 150 206 262 389 491 615 816 1038 1407 1870 2797 4171 5484 5970 5863 5952 5899 5977 5903 5991 5836 5604 3978 2709 1899 1394 1061 796 643 484 321 265 195 159 100 64 60 49 40 40 26 20
ac ac 61282 45.8 49 6.0e-01 9.6 -0.98 15 9 21 22 24 33 36 51 78 116 153 200 246 327 420 543 713 990 1367 2021 2894 3929 4161 4170 4122 4220 4170 4132 4157 4150 3810 2931 1817 1296 959 764 531 408 348 250 192 134 99 75 48 28 37 29 15 14 22
ca ca 88913 42.1 49 7.5e-01 12 -1.08 16 21 29 34 46 46 57 76 108 171 208 307 351 487 650 800 1100 1420 1933 2907 4388 5673 5973 5996 5954 6168 6044 5971 6031 6024 5487 4150 2700 1908 1346 1086 799 614 486 376 275 175 142 102 73 56 41 34 32 28 30 
 Host name	rsat
 Job started	2025-12-19.152006
 Job done	2025-12-19.152014
 Seconds	7.85
	user	7.85
	system	0.02
	cuser	0.01
;	csystem	0