RSAT - peak-motifs result

Analysis: MITF_K243R_top5000 (19/12/2025 15:21)

peak-motifs  -v 1 -title MITF_K243R_top5000 -i $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.151950_2025-12-19.151950_Y26lkY/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.151950_2025-12-19.151950_Y26lkY

motif discovery
oligos_6nt_mkv4	oligos_6nt_mkv4_m1 assembly: cttttc (sig=11.31; e-value=4.9e-12) RC: gaaaag oligos_6nt_mkv4_m2 assembly: cgcccg (sig=6.32; e-value=4.8e-07) RC: cgggcg oligos_6nt_mkv4_m3 assembly: gccaggc (sig=6.13; e-value=7.4e-07) RC: gcctggc oligos_6nt_mkv4_m4 assembly: ctgggca (sig=5.43; e-value=3.7e-06) RC: tgcccag oligos_6nt_mkv4_m5 assembly: aaatta (sig=4.87; e-value=1.3e-05) RC: taattt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv5	oligos_7nt_mkv5_m1 assembly: attttta (sig=9.25; e-value=5.6e-10) RC: taaaaat oligos_7nt_mkv5_m2 assembly: ctttttc (sig=4.62; e-value=2.4e-05) RC: gaaaaag oligos_7nt_mkv5_m3 assembly: ctgtgtc (sig=2.08; e-value=0.0083) RC: gacacag oligos_7nt_mkv5_m4 assembly: ctgtctc (sig=1.98; e-value=0.01) RC: gagacag oligos_7nt_mkv5_m5 assembly: caaaaac (sig=1.96; e-value=0.011) RC: gtttttg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv4_m1	k-mer sig=11.31; evalue=4.9e-12 tyCTTTTCyy RRGAAAAGRA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 626 (12.67%) Max nb of predicted sites per peak: 5  (chromosome_GRCh38_7_1_159345973_1:101859782-101860093()) Mean nb of predicted sites per peak: 1.17	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv4_m2	k-mer sig=6.32; evalue=4.8e-07 ssCGCCCGss SSCGGGCGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 582 (11.78%) Max nb of predicted sites per peak: 24  (chromosome_GRCh38_5_1_181538259_1:472900-473184()) Mean nb of predicted sites per peak: 2.77	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv4_m3	k-mer sig=6.13; evalue=7.4e-07 srGCCaGGCts SAGCCTGGCYS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 978 (19.80%) Max nb of predicted sites per peak: 11  (chromosome_GRCh38_15_1_101991189_1:89868217-89868538()) Mean nb of predicted sites per peak: 1.71	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv4_m4	k-mer sig=5.43; evalue=3.7e-06 ssCTGGGCrss SSYGCCCAGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1084 (21.95%) Max nb of predicted sites per peak: 16  (chromosome_GRCh38_7_1_159345973_1:193029-193320()) Mean nb of predicted sites per peak: 1.69	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv4_m5	k-mer sig=4.87; evalue=1.3e-05 aaAAATTAgm KCTAATTTTT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1146 (23.20%) Max nb of predicted sites per peak: 5  (chromosome_GRCh38_3_1_198295559_1:152016247-152016513()) Mean nb of predicted sites per peak: 1.19	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv5_m1	k-mer sig=9.25; evalue=5.6e-10 dtATTTTTAtw WATAAAAATAH	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1101 (22.29%) Max nb of predicted sites per peak: 26  (chromosome_GRCh38_17_1_83257441_1:40118556-40118950()) Mean nb of predicted sites per peak: 1.56	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv5_m2	k-mer sig=4.62; evalue=2.4e-05 twCTTTTTCwy RWGAAAAAGWA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 360 (7.29%) Max nb of predicted sites per peak: 4  (chromosome_GRCh38_2_1_242193529_1:228189843-228190076()) Mean nb of predicted sites per peak: 1.09	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv5_m3	k-mer sig=2.08; evalue=0.0083 stCTGTGTCtc GAGACACAGAS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 542 (10.97%) Max nb of predicted sites per peak: 38  (chromosome_GRCh38_6_1_170805979_1:468927-469288()) Mean nb of predicted sites per peak: 1.30	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv5_m4	k-mer sig=1.98; evalue=0.01 cyCTGTCTCym KRGAGACAGRG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 878 (17.78%) Max nb of predicted sites per peak: 30  (chromosome_GRCh38_6_1_170805979_1:468927-469288()) Mean nb of predicted sites per peak: 1.31	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv5_m5	k-mer sig=1.96; evalue=0.011 waCAAAAACwa TWGTTTTTGTW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 534 (10.81%) Max nb of predicted sites per peak: 4  (chromosome_GRCh38_5_1_181538259_1:131132560-131132945()) Mean nb of predicted sites per peak: 1.10	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title MITF_K243R_top5000 -i $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.151950_2025-12-19.151950_Y26lkY/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.151950_2025-12-19.151950_Y26lkY

Warning: Not a single pattern was found in file tmp/www-data/2025/12/19/peak-motifs.2025-12-19.151950_2025-12-19.151950_Y26lkY/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/12/19/peak-motifs.2025-12-19.151950_2025-12-19.151950_Y26lkY/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab