peak-motifs HNF4A-chipseq

Motif discovery

Motif 1 oligos_6nt_mkv4_m1

k-mer sig=169.50; evalue=3.2e-170

gsagCGGAGCss

SSGCTCCGCTSC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsagCGGAGCss

ZNF331 MA1726.2 D 10 0.8333 0.738 0.615 NA NA

ZBED4 MA2328.1 R 9 0.6923 0.877 0.607 NA NA

SP4 MA0685.2 D 9 0.7500 0.730 0.548 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3467 (17.96%)
Max nb of predicted sites per peak: 7
(chr17:65612608-65614318)
Mean nb of predicted sites per peak: 1.45

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv4_m2

k-mer sig=123.67; evalue=2.1e-124

ggGCGGGGCGsg

CSCGCCCCGCCC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ggGCGGGGCGsg

ZBED4 MA2328.1 R 10 0.8333 0.962 0.801 NA NA

KLF15 MA1513.2 R 8 0.6667 0.910 0.607 NA NA

KLF7 MA1959.2 D 8 0.6667 0.885 0.590 NA NA

Total matches= 26 (23 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4750 (24.61%)
Max nb of predicted sites per peak: 17
(chr14:115040804-115042525)
Mean nb of predicted sites per peak: 2.37

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv4_m3

k-mer sig=112.45; evalue=3.5e-113

ssCGCCTCgss

SSCGAGGCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCGCCTCgss

ZBED4 MA2328.1 D 10 0.9091 0.762 0.693 NA NA

SP2 MA0516.3 R 8 0.6667 0.802 0.535 NA NA

KLF12 MA0742.2 R 8 0.6667 0.791 0.527 NA NA

Total matches= 18 (15 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3886 (20.13%)
Max nb of predicted sites per peak: 11
(chr17:15704415-15706139)
Mean nb of predicted sites per peak: 1.76

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv4_m4

k-mer sig=105.84; evalue=1.4e-106

sgCGAGCGcg

CGCGCTCGCS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sgCGAGCGcg

TCFL5 MA0632.3 D 7 0.6364 0.753 0.479 NA NA

ZBTB14 MA1650.2 R 7 0.6364 0.705 0.449 NA NA

KLF15 MA1513.2 R 7 0.6364 0.702 0.447 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3831 (19.85%)
Max nb of predicted sites per peak: 28
(chr5:33274068-33275192)
Mean nb of predicted sites per peak: 2.58

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv4_m5

k-mer sig=97.45; evalue=3.5e-98

ssCGCTGCgss

SSCGCAGCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCGCTGCgss

ZBED4 MA2328.1 D 10 0.9091 0.715 0.650 NA NA

ZNF93 MA1721.2 R 10 0.6667 0.781 0.521 NA NA

ZIC5 MA1584.2 D 10 0.6250 0.761 0.476 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3821 (19.79%)
Max nb of predicted sites per peak: 16
(chr17:15704415-15706139)
Mean nb of predicted sites per peak: 2.48

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=30.59; evalue=2.6e-31

csgCcCCGCCGCcccss

SSGGGGCGGCGGGGCSG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor csgCcCCGCCGCcccss

PATZ1 MA1961.2 R 11 0.6471 0.836 0.541 NA NA

ZNF610 MA1713.2 D 10 0.5882 0.803 0.472 NA NA

KLF16 MA0741.1 D 11 0.6471 0.728 0.471 NA NA

Total matches= 16 (13 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 5345 (27.69%)
Max nb of predicted sites per peak: 46
(chr11:107131493-107132324)
Mean nb of predicted sites per peak: 5.42

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=28.35; evalue=4.5e-29

wwdTTAAAAAAmAAaw

WTTTKTTTTTTAAHWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwdTTAAAAAAmAAaw

FOXE1 MA1487.3 D 12 0.7500 0.747 0.560 NA NA

FOXD2 MA0847.4 D 11 0.6875 0.703 0.483 NA NA

ZNF384 MA1125.2 D 8 0.5000 0.960 0.480 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 5076 (26.30%)
Max nb of predicted sites per peak: 66
(chr6:135060598-135060907)
Mean nb of predicted sites per peak: 5.66

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=30.59; evalue=2.6e-31

ssgsCcgCccCGCCgCgccCgCss

SSGCGGGCGCGGCGGGGCGGSCSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssgsCcgCccCGCCgCgccCgCss

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 5413 (28.04%)
Max nb of predicted sites per peak: 92
(chr17:65782557-65784011)
Mean nb of predicted sites per peak: 8.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=29.68; evalue=2.1e-30

ssggCCCGCcCCGCgcccgssgcs

SGCSSCGGGCGCGGGGCGGGCCSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssggCCCGCcCCGCgcccgssgcs

ZBED4 MA2328.1 D 10 0.4167 0.967 0.403 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 5257 (27.23%)
Max nb of predicted sites per peak: 91
(chr17:65782557-65784011)
Mean nb of predicted sites per peak: 6.87

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

k-mer sig=30.59; evalue=2.6e-31

ssccgCgCCGCccCGCCggmmgss

SSCKKCCGGCGGGGCGGCGCGGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssccgCgCCGCccCGCCggmmgss

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4895 (25.36%)
Max nb of predicted sites per peak: 55
(chr17:65782557-65784011)
Mean nb of predicted sites per peak: 5.41

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv5_m1

k-mer sig=125.48; evalue=3.3e-126

ssCCCCGCCCcs

SGGGGCGGGGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCCCCGCCCcs

PATZ1 MA1961.2 R 11 0.9167 0.943 0.864 NA NA

SP3 MA0746.3 D 11 0.9167 0.848 0.777 NA NA

KLF5 MA0599.1 D 10 0.8333 0.916 0.763 NA NA

Total matches= 34 (31 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 5214 (27.01%)
Max nb of predicted sites per peak: 16
(chr17:31564499-31565379)
Mean nb of predicted sites per peak: 2.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv5_m2

k-mer sig=99.09; evalue=8.1e-100

sstGCGCcTGCGcs

SGCGCAGGCGCASS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sstGCGCcTGCGcs

Nrf1 MA0506.3 D 12 0.8571 0.965 0.827 NA NA

TCF4 MA0830.3 D 8 0.5714 0.776 0.443 NA NA

TCFL5 MA0632.3 R 8 0.5714 0.740 0.423 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3962 (20.53%)
Max nb of predicted sites per peak: 18
(chr5:33274068-33275192)
Mean nb of predicted sites per peak: 2.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv5_m3

k-mer sig=96.14; evalue=7.2e-97

ssCGCCCTCGss

SSCGAGGGCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCGCCCTCGss

EGR4 MA0733.2 D 11 0.9167 0.789 0.724 NA NA

EGR3 MA0732.2 D 11 0.9167 0.783 0.718 NA NA

EGR2 MA0472.2 D 11 0.9167 0.766 0.702 NA NA

Total matches= 25 (22 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3794 (19.65%)
Max nb of predicted sites per peak: 11
(chr17:31564499-31565379)
Mean nb of predicted sites per peak: 1.71

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv5_m4

k-mer sig=93.66; evalue=2.2e-94

scCGCCcCCGcc

GGCGGGGGCGGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scCGCCcCCGcc

EGR3 MA0732.2 D 11 0.9167 0.801 0.734 NA NA

EGR4 MA0733.2 D 11 0.9167 0.778 0.714 NA NA

EGR2 MA0472.2 D 11 0.9167 0.752 0.690 NA NA

Total matches= 31 (28 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4730 (24.50%)
Max nb of predicted sites per peak: 22
(chr17:63499182-63500483)
Mean nb of predicted sites per peak: 2.83

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv5_m5

k-mer sig=69.57; evalue=2.7e-70

wvTGACTCAsw

WSTGAGTCABW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wvTGACTCAsw

FOSL2 MA0478.2 D 10 0.9091 0.946 0.860 NA NA

BACH2 MA1101.3 D 11 1.0000 0.844 0.844 NA NA

MAFK MA0496.4 D 10 0.9091 0.903 0.821 NA NA

Total matches= 37 (34 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2069 (10.72%)
Max nb of predicted sites per peak: 5
(chr8:84191432-84192878)
Mean nb of predicted sites per peak: 1.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

k-mer sig=19.57; evalue=2.7e-20

wwhTTTTTTTAAAAAAAdww

WWHTTTTTTTAAAAAAADWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwhTTTTTTTAAAAAAAdww

FOXE1 MA1487.3 R 12 0.6000 0.709 0.426 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2955 (15.31%)
Max nb of predicted sites per peak: 96
(chr14:20961496-20962769)
Mean nb of predicted sites per peak: 9.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

k-mer sig=18.73; evalue=1.9e-19

ssssgcgCgcgCcCCGCccccsss

SSSGGGGGCGGGGCGCGCGCSSSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssssgcgCgcgCcCCGCccccsss

PATZ1 MA1961.2 R 11 0.4583 0.913 0.419 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 5470 (28.34%)
Max nb of predicted sites per peak: 92
(chr17:65782557-65784011)
Mean nb of predicted sites per peak: 7.59

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 positions_7nt_m3

k-mer sig=18.73; evalue=1.9e-19

ssacttccGGcGGCGGgGcGGGss

SSCCCGCCCCGCCGCCGGAAGTSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssacttccGGcGGCGGgGcGGGss

ZBED4 MA2328.1 R 10 0.4167 0.965 0.402 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4799 (24.86%)
Max nb of predicted sites per peak: 35
(chr17:65782557-65784011)
Mean nb of predicted sites per peak: 3.86

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 positions_7nt_m4

k-mer sig=7.95; evalue=1.1e-08

wvTGACTCAsw

WSTGAGTCABW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wvTGACTCAsw

FOSL2 MA0478.2 D 10 0.9091 0.946 0.860 NA NA

BACH2 MA1101.3 D 11 1.0000 0.844 0.844 NA NA

MAFK MA0496.4 D 10 0.9091 0.903 0.821 NA NA

Total matches= 37 (34 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2069 (10.72%)
Max nb of predicted sites per peak: 5
(chr8:84191432-84192878)
Mean nb of predicted sites per peak: 1.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 positions_7nt_m5

k-mer sig=7.09; evalue=8.1e-08

sstCCCCGGGGass

SSTCCCCGGGGASS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sstCCCCGGGGass

EBF1 MA0154.5 D 11 0.7857 0.762 0.599 NA NA

Ebf4 MA2122.1 R 11 0.7857 0.749 0.588 NA NA

EBF3 MA1637.2 R 9 0.6429 0.769 0.495 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1155 (5.98%)
Max nb of predicted sites per peak: 8
(chrY:90741848-90743085)
Mean nb of predicted sites per peak: 2.24

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus JASPAR2024_CORE_vertebrates_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: HNF4A-chipseq (19/12/2025 16:00)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssgsCcgCccCGCCgCgccCgCss

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssggCCCGCcCCGCgcccgssgcs

ZBED4 MA2328.1 D 10 0.4167 0.967 0.403 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssccgCgCCGCccCGCCggmmgss

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwhTTTTTTTAAAAAAAdww

FOXE1 MA1487.3 R 12 0.6000 0.709 0.426 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssssgcgCgcgCcCCGCccccsss

PATZ1 MA1961.2 R 11 0.4583 0.913 0.419 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssacttccGGcGGCGGgGcGGGss

ZBED4 MA2328.1 R 10 0.4167 0.965 0.402 NA NA

Total matches= 1

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: HNF4A-chipseq (19/12/2025 16:00)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssgsCcgCccCGCCgCgccCgCss Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssggCCCGCcCCGCgcccgssgcs ZBED4 MA2328.1 D 10 0.4167 0.967 0.403 NA NA Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssccgCgCCGCccCGCCggmmgss Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wwhTTTTTTTAAAAAAAdww FOXE1 MA1487.3 R 12 0.6000 0.709 0.426 NA NA Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssssgcgCgcgCcCCGCccccsss PATZ1 MA1961.2 R 11 0.4583 0.913 0.419 NA NA Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssacttccGGcGGCGGgGcGGGss ZBED4 MA2328.1 R 10 0.4167 0.965 0.402 NA NA Total matches= 1

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssgsCcgCccCGCCgCgccCgCss

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssggCCCGCcCCGCgcccgssgcs

ZBED4 MA2328.1 D 10 0.4167 0.967 0.403 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssccgCgCCGCccCGCCggmmgss

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwhTTTTTTTAAAAAAAdww

FOXE1 MA1487.3 R 12 0.6000 0.709 0.426 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssssgcgCgcgCcCCGCccccsss

PATZ1 MA1961.2 R 11 0.4583 0.913 0.419 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssacttccGGcGGCGGgGcGGGss

ZBED4 MA2328.1 R 10 0.4167 0.965 0.402 NA NA

Total matches= 1