/var/www/html/rsat/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.175405_2026-01-04.175405_YulKOI/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.175405_2026-01-04.175405_YulKOI/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title oxLDL_CD4+_T_cell_chromatin_accessibility -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.175405_2026-01-04.175405_YulKOI/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.175405_2026-01-04.175405_YulKOI/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.175405_2026-01-04.175405_YulKOI/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	1572
	Sum of sequence lengths      	452357
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	287
	Possible positions           	450785
 Oligonucleotide statistics:
	Total occurrences    	445573
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	450785
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	19	348
	2	-24	[-479,-460]	-469.5	25	444
	3	-23	[-459,-440]	-449.5	30	558
	4	-22	[-439,-420]	-429.5	33	647
	5	-21	[-419,-400]	-409.5	40	739
	6	-20	[-399,-380]	-389.5	48	886
	7	-19	[-379,-360]	-369.5	55	1051
	8	-18	[-359,-340]	-349.5	65	1188
	9	-17	[-339,-320]	-329.5	83	1546
	10	-16	[-319,-300]	-309.5	103	1858
	11	-15	[-299,-280]	-289.5	129	2355
	12	-14	[-279,-260]	-269.5	161	2921
	13	-13	[-259,-240]	-249.5	191	3568
	14	-12	[-239,-220]	-229.5	229	4254
	15	-11	[-219,-200]	-209.5	279	5114
	16	-10	[-199,-180]	-189.5	346	6207
	17	-9	[-179,-160]	-169.5	439	7908
	18	-8	[-159,-140]	-149.5	584	10115
	19	-7	[-139,-120]	-129.5	768	13662
	20	-6	[-119,-100]	-109.5	964	17413
	21	-5	[-99,-80]	-89.5	1231	21821
	22	-4	[-79,-60]	-69.5	1560	28029
	23	-3	[-59,-40]	-49.5	1572	31440
	24	-2	[-39,-20]	-29.5	1572	31440
	25	-1	[-19,0]	-9.5	1572	31440
	26	0	[1,20]	10.5	1572	31440
	27	1	[21,40]	30.5	1572	31440
	28	2	[41,60]	50.5	1572	31411
	29	3	[61,80]	70.5	1532	27365
	30	4	[81,100]	90.5	1208	21301
	31	5	[101,120]	110.5	952	17023
	32	6	[121,140]	130.5	756	13284
	33	7	[141,160]	150.5	570	9846
	34	8	[161,180]	170.5	435	7717
	35	9	[181,200]	190.5	339	6074
	36	10	[201,220]	210.5	272	5020
	37	11	[221,240]	230.5	227	4177
	38	12	[241,260]	250.5	191	3503
	39	13	[261,280]	270.5	161	2853
	40	14	[281,300]	290.5	127	2298
	41	15	[301,320]	310.5	101	1822
	42	16	[321,340]	330.5	82	1505
	43	17	[341,360]	350.5	62	1167
	44	18	[361,380]	370.5	55	1037
	45	19	[381,400]	390.5	47	872
	46	20	[401,420]	410.5	40	729
	47	21	[421,440]	430.5	33	641
	48	22	[441,460]	450.5	29	549
	49	23	[461,480]	470.5	25	433
	50	24	[481,500]	490.5	19	326

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
tt tt 15535 165.0 49 1.8e-14 2.8e-13 12.55 1 10 6 11 19 10 17 31 37 58 51 61 101 105 136 129 176 238 329 483 543 716 993 1112 1165 1154 1094 1141 1068 899 748 570 435 386 234 214 164 160 144 114 89 47 70 52 42 33 40 39 37 14 10
aa aa 15981 148.5 49 5.9e-12 9.5e-11 10.02 2 26 26 18 19 47 32 27 36 67 61 90 96 126 122 189 212 269 351 521 652 807 1058 1101 1124 1122 1212 1154 1144 991 704 550 468 322 278 210 158 101 114 58 64 50 31 33 36 24 19 26 11 14 10
gg gg 57323 139.8 49 1.1e-10 1.8e-09 8.74 3 41 55 89 86 98 94 125 168 223 258 314 341 459 579 700 840 1023 1292 1703 2144 2723 3652 3822 3897 3819 3808 3938 3921 3562 2754 2212 1772 1327 1091 865 632 566 402 412 311 250 228 153 144 123 81 97 56 38 35
cc cc 57053 128.8 49 4.3e-09 6.9e-08 7.16 4 55 51 70 65 92 155 157 133 190 240 310 397 482 582 691 742 1040 1332 1764 2344 2807 3399 4003 3883 3843 3947 3934 3873 3336 2687 2260 1759 1276 902 742 637 514 498 353 309 269 193 137 134 94 93 70 77 77 55
cg cg 45382 97.2 49 5.0e-05 0.0008 3.10 5 32 51 54 82 79 95 123 119 171 203 266 308 402 468 564 682 855 1038 1398 1846 2206 2788 3098 3021 3073 3037 3079 3025 2751 2113 1749 1346 1002 880 623 530 425 323 299 238 187 156 119 94 110 68 67 57 49 33
tg tg 22410 91.0 49 2.5e-04 0.004 2.40 6 12 16 22 23 23 35 42 46 58 70 113 142 159 191 215 282 353 454 664 816 1081 1427 1552 1718 1554 1592 1609 1613 1387 1066 834 649 485 370 318 263 220 170 155 112 97 86 55 56 44 50 30 36 24 21
gt gt 17215 82.9 49 1.8e-03 0.028 1.55 7 6 12 21 20 22 33 39 45 36 50 85 96 140 157 159 244 271 363 548 643 857 1078 1191 1308 1184 1201 1259 1161 1094 800 644 436 373 281 231 218 174 139 117 102 75 68 40 43 35 37 25 22 21 11
ca ca 22562 79.5 49 3.8e-03 0.06 1.22 8 16 25 30 32 33 49 53 65 63 108 127 161 165 208 248 337 403 535 713 856 1153 1426 1649 1539 1600 1629 1571 1638 1346 1048 836 658 437 341 256 235 209 168 111 99 90 66 43 56 33 26 27 20 12 13
gc gc 54164 62.8 49 9.0e-02 1.4 -0.16 9 38 59 63 91 94 107 125 129 204 242 299 378 423 519 677 781 1024 1267 1666 2184 2591 3405 3766 3683 3722 3646 3612 3747 3215 2561 2057 1661 1197 989 720 609 490 404 341 263 210 191 149 120 121 87 76 68 52 41
at at 9128 55.3 49 2.5e-01 4 -0.60 10 5 7 6 10 14 12 21 27 34 38 42 56 75 82 87 103 150 189 251 322 472 572 681 650 646 708 679 655 567 429 329 259 187 132 118 107 69 62 56 51 36 28 14 23 17 12 14 12 7 5
tc tc 23755 54.3 49 2.8e-01 4.5 -0.65 11 20 32 29 31 44 46 64 79 77 99 112 146 203 255 263 336 406 537 757 891 1130 1413 1724 1612 1676 1705 1677 1672 1469 1083 897 647 498 386 291 288 216 186 137 118 97 69 68 55 45 54 39 32 28 16
ta ta 7544 53.8 49 3.0e-01 4.7 -0.67 12 4 6 10 10 17 10 16 23 23 32 27 44 64 62 73 90 119 171 229 305 387 491 533 586 586 524 552 499 466 333 253 198 153 122 94 73 55 64 48 41 29 29 23 17 15 10 10 6 8 4
ag ag 28081 52.0 49 3.6e-01 5.8 -0.76 13 23 24 43 47 54 59 60 88 101 115 137 189 211 233 311 390 513 636 848 1083 1360 1783 2017 1993 2033 1951 1950 1999 1689 1332 1030 798 602 431 361 297 247 221 173 145 99 73 86 68 51 37 35 23 18 14
ac ac 17453 51.0 49 3.9e-01 6.3 -0.80 14 15 19 24 31 22 43 46 44 49 83 113 122 145 171 194 246 300 403 536 688 883 1083 1228 1193 1261 1253 1212 1224 1038 823 631 504 338 294 228 172 168 133 98 71 79 56 38 34 29 17 16 23 15 17
ct ct 27430 43.1 49 7.1e-01 11 -1.06 15 24 33 35 35 49 49 58 79 91 109 126 178 218 266 307 362 470 621 824 1060 1294 1669 1948 1965 1969 1950 1865 1973 1652 1281 988 804 590 463 358 301 239 220 165 127 114 94 89 61 53 66 39 41 34 24
ga ga 24557 36.8 49 9.0e-01 14 -1.16 16 21 22 33 46 41 50 64 70 101 99 133 166 191 215 271 325 426 538 685 928 1164 1544 1729 1707 1767 1752 1725 1740 1493 1196 898 699 526 411 363 250 227 184 170 130 93 67 68 54 45 32 31 28 22 17 
 Host name	rsat
 Job started	2026-01-04.175544
 Job done	2026-01-04.175546
 Seconds	2.66
	user	2.66
	system	0.01
	cuser	0.01
;	csystem	0