/var/www/html/rsat/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.175405_2026-01-04.175405_YulKOI/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.175405_2026-01-04.175405_YulKOI/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.175405_2026-01-04.175405_YulKOI/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.175405_2026-01-04.175405_YulKOI/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2.tf
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.175405_2026-01-04.175405_YulKOI/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.175405_2026-01-04.175405_YulKOI/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.175405_2026-01-04.175405_YulKOI/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.175405_2026-01-04.175405_YulKOI/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.175405_2026-01-04.175405_YulKOI/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.175405_2026-01-04.175405_YulKOI/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.175405_2026-01-04.175405_YulKOI/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2.tf
		file1	1	12	5381
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_test_vs_ctrl_m2 MA1633.2 oligos_7nt_test_vs_ctrl_m2 BACH1 0.789 0.592 12 9 9 12 0.7500 0.7500 1.0000 D 3
oligos_7nt_test_vs_ctrl_m2 MA1128.2 oligos_7nt_test_vs_ctrl_m2 FOSL1::JUN 0.767 0.575 12 9 9 12 0.7500 0.7500 1.0000 D 3
oligos_7nt_test_vs_ctrl_m2 MA1141.2 oligos_7nt_test_vs_ctrl_m2 FOS::JUND 0.760 0.570 12 9 9 12 0.7500 0.7500 1.0000 R 3
oligos_7nt_test_vs_ctrl_m2 MA0655.1 oligos_7nt_test_vs_ctrl_m2 JDP2 0.757 0.567 12 9 9 12 0.7500 0.7500 1.0000 D 3
oligos_7nt_test_vs_ctrl_m2 MA1101.3 oligos_7nt_test_vs_ctrl_m2 BACH2 0.736 0.566 12 11 10 13 0.7692 0.8333 0.9091 D 2
oligos_7nt_test_vs_ctrl_m2 MA0490.3 oligos_7nt_test_vs_ctrl_m2 JUNB 0.753 0.565 12 9 9 12 0.7500 0.7500 1.0000 D 3
oligos_7nt_test_vs_ctrl_m2 MA1130.2 oligos_7nt_test_vs_ctrl_m2 FOSL2::JUN 0.751 0.563 12 9 9 12 0.7500 0.7500 1.0000 R 3
oligos_7nt_test_vs_ctrl_m2 MA0099.4 oligos_7nt_test_vs_ctrl_m2 FOS::JUN 0.748 0.561 12 9 9 12 0.7500 0.7500 1.0000 R 3
oligos_7nt_test_vs_ctrl_m2 MA0477.3 oligos_7nt_test_vs_ctrl_m2 FOSL1 0.746 0.560 12 9 9 12 0.7500 0.7500 1.0000 D 3
oligos_7nt_test_vs_ctrl_m2 MA0491.3 oligos_7nt_test_vs_ctrl_m2 JUND 0.739 0.554 12 9 9 12 0.7500 0.7500 1.0000 D 3
oligos_7nt_test_vs_ctrl_m2 MA1137.2 oligos_7nt_test_vs_ctrl_m2 FOSL1::JUNB 0.737 0.553 12 9 9 12 0.7500 0.7500 1.0000 D 3
oligos_7nt_test_vs_ctrl_m2 MA1144.2 oligos_7nt_test_vs_ctrl_m2 FOSL2::JUND 0.729 0.546 12 9 9 12 0.7500 0.7500 1.0000 D 3
oligos_7nt_test_vs_ctrl_m2 MA1134.2 oligos_7nt_test_vs_ctrl_m2 FOS::JUNB 0.727 0.545 12 9 9 12 0.7500 0.7500 1.0000 R 3
oligos_7nt_test_vs_ctrl_m2 MA1135.2 oligos_7nt_test_vs_ctrl_m2 FOSB::JUNB 0.713 0.535 12 9 9 12 0.7500 0.7500 1.0000 D 3
oligos_7nt_test_vs_ctrl_m2 MA1138.2 oligos_7nt_test_vs_ctrl_m2 FOSL2::JUNB 0.713 0.534 12 9 9 12 0.7500 0.7500 1.0000 D 3
oligos_7nt_test_vs_ctrl_m2 MA1132.2 oligos_7nt_test_vs_ctrl_m2 JUN::JUNB 0.800 0.534 12 8 8 12 0.6667 0.6667 1.0000 D 3
oligos_7nt_test_vs_ctrl_m2 MA0841.2 oligos_7nt_test_vs_ctrl_m2 NFE2 0.758 0.525 12 10 9 13 0.6923 0.7500 0.9000 D 3
oligos_7nt_test_vs_ctrl_m2 MA0806.1 oligos_7nt_test_vs_ctrl_m2 TBX4 0.758 0.505 12 8 8 12 0.6667 0.6667 1.0000 R 4
oligos_7nt_test_vs_ctrl_m2 MA0489.3 oligos_7nt_test_vs_ctrl_m2 Jun 0.751 0.501 12 8 8 12 0.6667 0.6667 1.0000 D 4
oligos_7nt_test_vs_ctrl_m2 MA0807.1 oligos_7nt_test_vs_ctrl_m2 TBX5 0.751 0.501 12 8 8 12 0.6667 0.6667 1.0000 R 4
oligos_7nt_test_vs_ctrl_m2 MA1142.2 oligos_7nt_test_vs_ctrl_m2 FOSL1::JUND 0.750 0.500 12 8 8 12 0.6667 0.6667 1.0000 D 3
oligos_7nt_test_vs_ctrl_m2 MA0801.1 oligos_7nt_test_vs_ctrl_m2 MGA 0.735 0.490 12 8 8 12 0.6667 0.6667 1.0000 R 4
oligos_7nt_test_vs_ctrl_m2 MA0089.3 oligos_7nt_test_vs_ctrl_m2 MAFG::NFE2L1 0.759 0.488 12 11 9 14 0.6429 0.7500 0.8182 D 3
oligos_7nt_test_vs_ctrl_m2 MA0805.1 oligos_7nt_test_vs_ctrl_m2 TBX1 0.721 0.481 12 8 8 12 0.6667 0.6667 1.0000 R 4
oligos_7nt_test_vs_ctrl_m2 MA0501.2 oligos_7nt_test_vs_ctrl_m2 MAF::NFE2 0.745 0.479 12 11 9 14 0.6429 0.7500 0.8182 D 3
oligos_7nt_test_vs_ctrl_m2 MA0150.3 oligos_7nt_test_vs_ctrl_m2 Nfe2l2 0.745 0.479 12 11 9 14 0.6429 0.7500 0.8182 D 3
oligos_7nt_test_vs_ctrl_m2 MA0476.2 oligos_7nt_test_vs_ctrl_m2 FOS 0.709 0.472 12 8 8 12 0.6667 0.6667 1.0000 R 3
oligos_7nt_test_vs_ctrl_m2 MA0775.2 oligos_7nt_test_vs_ctrl_m2 MEIS3 0.792 0.462 12 7 7 12 0.5833 0.5833 1.0000 D 3
oligos_7nt_test_vs_ctrl_m2 MA0093.4 oligos_7nt_test_vs_ctrl_m2 USF1 0.806 0.461 12 10 8 14 0.5714 0.6667 0.8000 R -2
oligos_7nt_test_vs_ctrl_m2 MA1988.2 oligos_7nt_test_vs_ctrl_m2 Atf3 0.770 0.449 12 7 7 12 0.5833 0.5833 1.0000 D 4
oligos_7nt_test_vs_ctrl_m2 MA1928.2 oligos_7nt_test_vs_ctrl_m2 BNC2 0.765 0.446 12 7 7 12 0.5833 0.5833 1.0000 R 4
oligos_7nt_test_vs_ctrl_m2 MA0835.3 oligos_7nt_test_vs_ctrl_m2 BATF3 0.762 0.445 12 7 7 12 0.5833 0.5833 1.0000 D 4
oligos_7nt_test_vs_ctrl_m2 MA0462.3 oligos_7nt_test_vs_ctrl_m2 BATF::JUN 0.755 0.440 12 7 7 12 0.5833 0.5833 1.0000 D 4
oligos_7nt_test_vs_ctrl_m2 MA1634.2 oligos_7nt_test_vs_ctrl_m2 BATF 0.754 0.440 12 7 7 12 0.5833 0.5833 1.0000 D 4
oligos_7nt_test_vs_ctrl_m2 MA1995.2 oligos_7nt_test_vs_ctrl_m2 Npas4 0.729 0.425 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_7nt_test_vs_ctrl_m2 MA0783.1 oligos_7nt_test_vs_ctrl_m2 PKNOX2 0.845 0.423 12 12 8 16 0.5000 0.6667 0.6667 R 4
oligos_7nt_test_vs_ctrl_m2 MA0498.3 oligos_7nt_test_vs_ctrl_m2 MEIS1 0.991 0.413 12 5 5 12 0.4167 0.4167 1.0000 D 4
oligos_7nt_test_vs_ctrl_m2 MA1108.3 oligos_7nt_test_vs_ctrl_m2 MXI1 0.820 0.410 12 6 6 12 0.5000 0.5000 1.0000 D 0 
 Host name	rsat
 Job started	2026-01-04.175729
 Job done	2026-01-04.175756
 Seconds	5.09
	user	5.09
	system	1.3
	cuser	19.13
;	csystem	1.7