One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.175405_2026-01-04.175405_YulKOI/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.175405_2026-01-04.175405_YulKOI/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m3_shift1 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=11; shift=1; ncol=12; -wwGAAAAGAww ; Alignment reference a 0 2224 2641 122 5769 5773 5627 5570 118 5985 2188 2510 c 0 1000 626 33 54 69 110 179 120 95 1069 1006 g 0 1373 1279 5897 132 103 109 108 5368 100 1147 1162 t 0 1755 1806 300 397 407 506 495 746 172 1948 1674

MA0029.2_shift2 (Mecom)
; oligos_7nt_test_vs_ctrl_m3 versus MA0029.2 (Mecom); m=1/10; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.660053; --AGAyAAGATA ; cor=; Ncor= a 0 0 20.0 0.0 27.0 1.0 27.0 26.0 0.0 27.0 0.0 24.0 c 0 0 1.0 1.0 0.0 10.0 0.0 0.0 0.0 0.0 3.0 1.0 g 0 0 2.0 25.0 0.0 0.0 0.0 1.0 27.0 0.0 0.0 0.0 t 0 0 4.0 1.0 0.0 16.0 0.0 0.0 0.0 0.0 24.0 2.0

MA1125.2_shift4 (ZNF384)
; oligos_7nt_test_vs_ctrl_m3 versus MA1125.2 (ZNF384); m=2/10; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.563802; ----AAAAAAaa ; cor=; Ncor= a 0 0 0 0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 c 0 0 0 0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 g 0 0 0 0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 t 0 0 0 0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0

MA0037.5_rc_shift2 (Gata3_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA0037.5_rc (Gata3_rc); m=3/10; ncol2=8; w=0; offset=1; strand=R; shift=2; score=0.561037; --AGATAAGa-- ; cor=; Ncor= a 0 0 20257.0 480.0 23868.0 800.0 22166.0 22866.0 2055.0 16442.0 0 0 c 0 0 608.0 255.0 291.0 528.0 960.0 280.0 2165.0 2551.0 0 0 g 0 0 903.0 23839.0 282.0 566.0 758.0 928.0 19702.0 3859.0 0 0 t 0 0 3100.0 294.0 427.0 22974.0 984.0 794.0 946.0 2016.0 0 0

MA1104.3_rc_shift2 (GATA6_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA1104.3_rc (GATA6_rc); m=4/10; ncol2=8; w=0; offset=1; strand=R; shift=2; score=0.560641; --AGATAAGA-- ; cor=; Ncor= a 0 0 61257.0 1706.0 76629.0 1124.0 72392.0 74865.0 5514.0 54635.0 0 0 c 0 0 1810.0 712.0 456.0 819.0 615.0 580.0 6459.0 7066.0 0 0 g 0 0 3228.0 75930.0 852.0 815.0 1393.0 1439.0 62936.0 11831.0 0 0 t 0 0 13149.0 1096.0 1507.0 76686.0 5044.0 2560.0 4535.0 5912.0 0 0

MA1970.2_rc_shift2 (TRPS1_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA1970.2_rc (TRPS1_rc); m=5/10; ncol2=8; w=0; offset=1; strand=R; shift=2; score=0.559944; --AGATAAGA-- ; cor=; Ncor= a 0 0 13985.0 622.0 17527.0 299.0 16498.0 16758.0 1654.0 12628.0 0 0 c 0 0 716.0 263.0 179.0 329.0 449.0 320.0 1426.0 1749.0 0 0 g 0 0 792.0 17146.0 265.0 215.0 462.0 560.0 14262.0 2547.0 0 0 t 0 0 2790.0 252.0 312.0 17440.0 874.0 645.0 941.0 1359.0 0 0

MA0606.3_shift0 (Nfat5)
; oligos_7nt_test_vs_ctrl_m3 versus MA0606.3 (Nfat5); m=6/10; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score=0.48958; ATGGAAAA---- ; cor=; Ncor= a 279.0 35.0 13.0 16.0 328.0 336.0 334.0 315.0 0 0 0 0 c 17.0 10.0 0.0 8.0 8.0 1.0 4.0 8.0 0 0 0 0 g 47.0 9.0 332.0 325.0 15.0 10.0 8.0 19.0 0 0 0 0 t 13.0 302.0 11.0 7.0 5.0 9.0 10.0 14.0 0 0 0 0

MA0036.4_rc_shift2 (GATA2_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA0036.4_rc (GATA2_rc); m=7/10; ncol2=7; w=0; offset=1; strand=R; shift=2; score=0.478139; --AGATAAG--- ; cor=; Ncor= a 0 0 10981.0 205.0 13943.0 58.0 13741.0 13360.0 1443.0 0 0 0 c 0 0 367.0 126.0 48.0 43.0 21.0 150.0 1223.0 0 0 0 g 0 0 492.0 13786.0 77.0 14.0 34.0 259.0 10607.0 0 0 0 t 0 0 2373.0 96.0 145.0 14098.0 417.0 444.0 940.0 0 0 0

MA2101.1_shift3 (ZNF677)
; oligos_7nt_test_vs_ctrl_m3 versus MA2101.1 (ZNF677); m=8/10; ncol2=12; w=0; offset=2; strand=D; shift=3; score=0.45668; ---ratAAGAAC ; cor=; Ncor= a 0 0 0 515.0 1022.0 254.0 1498.0 1515.0 31.0 1499.0 1339.0 34.0 c 0 0 0 98.0 145.0 373.0 18.0 6.0 10.0 51.0 43.0 1447.0 g 0 0 0 811.0 271.0 125.0 49.0 22.0 1511.0 17.0 65.0 40.0 t 0 0 0 157.0 143.0 829.0 16.0 38.0 29.0 14.0 134.0 60.0

MA0624.3_shift1 (Nfatc1)
; oligos_7nt_test_vs_ctrl_m3 versus MA0624.3 (Nfatc1); m=9/10; ncol2=6; w=0; offset=0; strand=D; shift=1; score=0.437099; -TGGAAA----- ; cor=; Ncor= a 0 128.0 55.0 62.0 6080.0 6107.0 5947.0 0 0 0 0 0 c 0 227.0 13.0 16.0 30.0 13.0 77.0 0 0 0 0 0 g 0 65.0 6106.0 6058.0 27.0 32.0 43.0 0 0 0 0 0 t 0 5771.0 17.0 55.0 54.0 39.0 124.0 0 0 0 0 0

MA0625.3_shift1 (NFATC3)
; oligos_7nt_test_vs_ctrl_m3 versus MA0625.3 (NFATC3); m=10/10; ncol2=6; w=0; offset=0; strand=D; shift=1; score=0.424449; -yGGAAa----- ; cor=; Ncor= a 0 289.0 0.0 0.0 5866.0 5866.0 5866.0 0 0 0 0 0 c 0 2313.0 0.0 0.0 261.0 0.0 1586.0 0 0 0 0 0 g 0 451.0 5866.0 5866.0 825.0 184.0 475.0 0 0 0 0 0 t 0 3553.0 0.0 0.0 8.0 0.0 1089.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=11; shift=1; ncol=12; -wwGAAAAGAww ; Alignment reference a 0 2224 2641 122 5769 5773 5627 5570 118 5985 2188 2510 c 0 1000 626 33 54 69 110 179 120 95 1069 1006 g 0 1373 1279 5897 132 103 109 108 5368 100 1147 1162 t 0 1755 1806 300 397 407 506 495 746 172 1948 1674
MA0029.2_shift2 (Mecom)				; oligos_7nt_test_vs_ctrl_m3 versus MA0029.2 (Mecom); m=1/10; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.660053; --AGAyAAGATA ; cor=; Ncor= a 0 0 20.0 0.0 27.0 1.0 27.0 26.0 0.0 27.0 0.0 24.0 c 0 0 1.0 1.0 0.0 10.0 0.0 0.0 0.0 0.0 3.0 1.0 g 0 0 2.0 25.0 0.0 0.0 0.0 1.0 27.0 0.0 0.0 0.0 t 0 0 4.0 1.0 0.0 16.0 0.0 0.0 0.0 0.0 24.0 2.0
MA1125.2_shift4 (ZNF384)				; oligos_7nt_test_vs_ctrl_m3 versus MA1125.2 (ZNF384); m=2/10; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.563802; ----AAAAAAaa ; cor=; Ncor= a 0 0 0 0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 c 0 0 0 0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 g 0 0 0 0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 t 0 0 0 0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0
MA0037.5_rc_shift2 (Gata3_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA0037.5_rc (Gata3_rc); m=3/10; ncol2=8; w=0; offset=1; strand=R; shift=2; score=0.561037; --AGATAAGa-- ; cor=; Ncor= a 0 0 20257.0 480.0 23868.0 800.0 22166.0 22866.0 2055.0 16442.0 0 0 c 0 0 608.0 255.0 291.0 528.0 960.0 280.0 2165.0 2551.0 0 0 g 0 0 903.0 23839.0 282.0 566.0 758.0 928.0 19702.0 3859.0 0 0 t 0 0 3100.0 294.0 427.0 22974.0 984.0 794.0 946.0 2016.0 0 0
MA1104.3_rc_shift2 (GATA6_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA1104.3_rc (GATA6_rc); m=4/10; ncol2=8; w=0; offset=1; strand=R; shift=2; score=0.560641; --AGATAAGA-- ; cor=; Ncor= a 0 0 61257.0 1706.0 76629.0 1124.0 72392.0 74865.0 5514.0 54635.0 0 0 c 0 0 1810.0 712.0 456.0 819.0 615.0 580.0 6459.0 7066.0 0 0 g 0 0 3228.0 75930.0 852.0 815.0 1393.0 1439.0 62936.0 11831.0 0 0 t 0 0 13149.0 1096.0 1507.0 76686.0 5044.0 2560.0 4535.0 5912.0 0 0
MA1970.2_rc_shift2 (TRPS1_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA1970.2_rc (TRPS1_rc); m=5/10; ncol2=8; w=0; offset=1; strand=R; shift=2; score=0.559944; --AGATAAGA-- ; cor=; Ncor= a 0 0 13985.0 622.0 17527.0 299.0 16498.0 16758.0 1654.0 12628.0 0 0 c 0 0 716.0 263.0 179.0 329.0 449.0 320.0 1426.0 1749.0 0 0 g 0 0 792.0 17146.0 265.0 215.0 462.0 560.0 14262.0 2547.0 0 0 t 0 0 2790.0 252.0 312.0 17440.0 874.0 645.0 941.0 1359.0 0 0
MA0606.3_shift0 (Nfat5)				; oligos_7nt_test_vs_ctrl_m3 versus MA0606.3 (Nfat5); m=6/10; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score=0.48958; ATGGAAAA---- ; cor=; Ncor= a 279.0 35.0 13.0 16.0 328.0 336.0 334.0 315.0 0 0 0 0 c 17.0 10.0 0.0 8.0 8.0 1.0 4.0 8.0 0 0 0 0 g 47.0 9.0 332.0 325.0 15.0 10.0 8.0 19.0 0 0 0 0 t 13.0 302.0 11.0 7.0 5.0 9.0 10.0 14.0 0 0 0 0
MA0036.4_rc_shift2 (GATA2_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA0036.4_rc (GATA2_rc); m=7/10; ncol2=7; w=0; offset=1; strand=R; shift=2; score=0.478139; --AGATAAG--- ; cor=; Ncor= a 0 0 10981.0 205.0 13943.0 58.0 13741.0 13360.0 1443.0 0 0 0 c 0 0 367.0 126.0 48.0 43.0 21.0 150.0 1223.0 0 0 0 g 0 0 492.0 13786.0 77.0 14.0 34.0 259.0 10607.0 0 0 0 t 0 0 2373.0 96.0 145.0 14098.0 417.0 444.0 940.0 0 0 0
MA2101.1_shift3 (ZNF677)				; oligos_7nt_test_vs_ctrl_m3 versus MA2101.1 (ZNF677); m=8/10; ncol2=12; w=0; offset=2; strand=D; shift=3; score=0.45668; ---ratAAGAAC ; cor=; Ncor= a 0 0 0 515.0 1022.0 254.0 1498.0 1515.0 31.0 1499.0 1339.0 34.0 c 0 0 0 98.0 145.0 373.0 18.0 6.0 10.0 51.0 43.0 1447.0 g 0 0 0 811.0 271.0 125.0 49.0 22.0 1511.0 17.0 65.0 40.0 t 0 0 0 157.0 143.0 829.0 16.0 38.0 29.0 14.0 134.0 60.0
MA0624.3_shift1 (Nfatc1)				; oligos_7nt_test_vs_ctrl_m3 versus MA0624.3 (Nfatc1); m=9/10; ncol2=6; w=0; offset=0; strand=D; shift=1; score=0.437099; -TGGAAA----- ; cor=; Ncor= a 0 128.0 55.0 62.0 6080.0 6107.0 5947.0 0 0 0 0 0 c 0 227.0 13.0 16.0 30.0 13.0 77.0 0 0 0 0 0 g 0 65.0 6106.0 6058.0 27.0 32.0 43.0 0 0 0 0 0 t 0 5771.0 17.0 55.0 54.0 39.0 124.0 0 0 0 0 0
MA0625.3_shift1 (NFATC3)				; oligos_7nt_test_vs_ctrl_m3 versus MA0625.3 (NFATC3); m=10/10; ncol2=6; w=0; offset=0; strand=D; shift=1; score=0.424449; -yGGAAa----- ; cor=; Ncor= a 0 289.0 0.0 0.0 5866.0 5866.0 5866.0 0 0 0 0 0 c 0 2313.0 0.0 0.0 261.0 0.0 1586.0 0 0 0 0 0 g 0 451.0 5866.0 5866.0 825.0 184.0 475.0 0 0 0 0 0 t 0 3553.0 0.0 0.0 8.0 0.0 1089.0 0 0 0 0 0